View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19362_low_1 (Length: 427)
Name: NF19362_low_1
Description: NF19362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19362_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 410
Target Start/End: Complemental strand, 44702105 - 44701709
Alignment:
| Q |
12 |
attatacttgatcattgacaatgggattatccacattaatcatcacaatatcttcatagataaattagaaaagcactcaacattttcttcaattgagaag |
111 |
Q |
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| T |
44702105 |
attatacttgatcattgacaatgggattatccacattaatcatcacaatatcttcatagataaattagaaaagcactcaacattttcttcaattgagaag |
44702006 |
T |
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| Q |
112 |
cccatgttttaattctaacacaatcactcgtattataaaaggtgcaattcttcacattaatgttttccacatcttctccgtcatcattcattctcattaa |
211 |
Q |
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| T |
44702005 |
cccatgttttaattctaacacaatcactcgtattataaaaggtgcaattcttcacattaatgttttccacatcttctccgtcatcattcattcttattaa |
44701906 |
T |
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| Q |
212 |
ggattcaaacactaattccttgtccaagactacaagtcatggtgtttgaagcattggtaagaataatgatattgaaaactttgatgtgatgaattgcatc |
311 |
Q |
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| T |
44701905 |
ggattcaaacactaattccttgtccaagactacaagtgatggtgtttgaagcattggtaagaataatgatattgaaaactttgatgtgatgaattgcacc |
44701806 |
T |
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| Q |
312 |
tttcgtggcacaagtaatggtgttagaattaaagcatgagctttttaattgaagaaaactttgaatgcttctgattttgtcttttcagatgaataatgt |
410 |
Q |
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| T |
44701805 |
tttcgtggcacaagtaatggtgttagaattaaaacatgagctttttaattgaagaaaactttgaatgcttctga--ttgtcttttcagatgaataatgt |
44701709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 18 - 132
Target Start/End: Complemental strand, 11532659 - 11532546
Alignment:
| Q |
18 |
cttgatcattgacaatgggattatccacattaatcatcacaatatcttcata-gataaattagaaaagcactcaacattttcttcaattgagaagcccat |
116 |
Q |
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| T |
11532659 |
cttgatcaatgacaatgggattttgcacattattcatcacaatatcttcatatgtaaaattagaaa--caaccaaagttttcttcaattgagactcccac |
11532562 |
T |
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| Q |
117 |
gttttaattctaacac |
132 |
Q |
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| T |
11532561 |
gatttgattctaacac |
11532546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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