View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19362_low_11 (Length: 237)
Name: NF19362_low_11
Description: NF19362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19362_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 8716525 - 8716314
Alignment:
| Q |
6 |
tttcatagcacaccaaacacatcattttgttttcgaaaccacgtggattttcactcacaataattttcaggttagattaacnnnnnnnnnnnnnnctacc |
105 |
Q |
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| T |
8716525 |
tttcattgcacaccaaacacatcattttgttttcgaaaccacgtggattttcactcacaataattttcaggttagattaactttttattttctttctgcc |
8716426 |
T |
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| Q |
106 |
cattttctttcattttcacgcgtacagatgaatgtgtttcaattgaaaattttcgtttgttgtatgttacgctcctaatcaaggcatgttttgaatatct |
205 |
Q |
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| T |
8716425 |
cattttctttcattttcacgcgtacagatgaatgtgtttcaattgaaaattttcgtttgttgtatgttatgctcctaatca----atgttttgaatatct |
8716330 |
T |
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| Q |
206 |
cgttttgataagtgat |
221 |
Q |
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| T |
8716329 |
cgttttgataagtgat |
8716314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 8723983 - 8723902
Alignment:
| Q |
6 |
tttcatagcacaccaaacacatcattttgttttcgaaaccacgtggatt-ttcactcacaataattttcaggttagattaac |
86 |
Q |
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| T |
8723983 |
tttcatagcacaacaaacacatcattttgtgttcgaaactgtgtggattcttcactcataataatttctaggttagcttaac |
8723902 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 6 - 187
Target Start/End: Original strand, 23443802 - 23443984
Alignment:
| Q |
6 |
tttcatagcacaccaaacacatcattttgttttcgaaaccacgtggatttt-cactcacaataattttcaggttagattaacnnnnnnnnnnnnnnctac |
104 |
Q |
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| T |
23443802 |
tttcatagcacatcaaacacatcattttgttttcgaaaccacgtggatttttcactcgcaataattttcaggttagattaactttttattttctttatgt |
23443901 |
T |
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| Q |
105 |
ccattttctttcattttcacgcgtacagatgaatgtgtttcaattgaaaattttcgtttgttgtatgttacgctcctaatcaa |
187 |
Q |
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| T |
23443902 |
tctttttctttcattttcacgcttacagatgaatgtgtttcaattgaaaattttcgtttgttgtatgttatgctccttatcaa |
23443984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 21236898 - 21236979
Alignment:
| Q |
6 |
tttcatagcacaccaaacacatcattttgttttcgaaaccacgtggatt-ttcactcacaataattttcaggttagattaac |
86 |
Q |
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| T |
21236898 |
tttcatagcagaacaaacacatcattttgtgttcgaaactgtgtggattcttcactcataataatttctaggttagcttaac |
21236979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 108 - 173
Target Start/End: Original strand, 14323979 - 14324044
Alignment:
| Q |
108 |
ttttctttcattttcacgcgtacagatgaatgtgtttcaattgaaaattttcgtttgttgtatgtt |
173 |
Q |
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| T |
14323979 |
ttttcttttgttttcatgcgtatagatgaatgtgtttcaattgaaatctttcatttgttgtttgtt |
14324044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 14333576 - 14333655
Alignment:
| Q |
6 |
tttcatagcacaccaaacacatcattttgttttcgaaaccacgtg-gattttcactcacaataattttcaggttagattaa |
85 |
Q |
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| T |
14333576 |
tttcatagtacaataaacacatcattttgttttccaaaccacatgcttttttcactcagaataattttca-gttagattaa |
14333655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 14333677 - 14333737
Alignment:
| Q |
108 |
ttttctttcattttcacgcgtacagatgaatgtgtttcaattgaaaattttcgtttgttgt |
168 |
Q |
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|||||||| |||||| ||||| ||||||||||||||||||||||| |||| |||||||| |
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| T |
14333677 |
ttttcttttgttttcatgcgtatagatgaatgtgtttcaattgaaatctttcatttgttgt |
14333737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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