View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19362_low_7 (Length: 319)
Name: NF19362_low_7
Description: NF19362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19362_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 10 - 300
Target Start/End: Original strand, 4384950 - 4385245
Alignment:
| Q |
10 |
ataattctttcaatgccttgtattatataggagtttggttcatgcattgccatttggaggtgcatacaacatggggtctaaagatggcctttttagtgga |
109 |
Q |
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| T |
4384950 |
ataattctttcaatgccttgtattatataggagtttggttcatgcattgccatttggaggtgcatacaacatggggtctaaagatggcctttttggtgga |
4385049 |
T |
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| Q |
110 |
caatggcaaaggtcctaaacaatcagtgatagctccacctaaagatcttccaaaatgttgatattcctcac-----atcaaatgttcatacaatttacaa |
204 |
Q |
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| T |
4385050 |
caatggcaaaggtcctaaacaatcagtgatagctccacctaaagatcttccaaaatgttgatattcctcacatcaaatcaaatgttcatacaattcacaa |
4385149 |
T |
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| Q |
205 |
agggtagtaggccttccaaattcccaaaagtaggtgtggaaggatacagaggagccaggcaaaaataaaagagagtgaaggggaaataaggttatt |
300 |
Q |
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| T |
4385150 |
agggtagtaggccttccaaattcacaaaagtaggtgtggagggatacagaggagccaggcaaaaataaaagagagtgaaggggaaaaaaggttatt |
4385245 |
T |
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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 25093738 - 25093814
Alignment:
| Q |
45 |
tggttcatgcattgccatttggaggtgcatacaacatggggtctaaagatggcctttttagtggacaatggcaaagg |
121 |
Q |
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||||| |||||||| |||||||| | |||||||||||||| || |||||||| ||| | ||||||||||| ||||| |
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| T |
25093738 |
tggtttatgcattgtcatttggaaattcatacaacatggggactgaagatggcatttgttgtggacaatggtaaagg |
25093814 |
T |
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