View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19363_high_4 (Length: 341)
Name: NF19363_high_4
Description: NF19363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19363_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 37445602 - 37445913
Alignment:
| Q |
18 |
cagccttcaacttctcaactttcttaatttcttctagtttgaatgaagttgtgattttagtatcatcgttcatgttttgttctgtgaatggaagcatctc |
117 |
Q |
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| T |
37445602 |
cagccttcaacttctcaactttcttaatttcttctagttggaatgaagttgtgattttagtatcatcgttcatgttttgttctgtgaatggaagcatctc |
37445701 |
T |
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| Q |
118 |
aggagtcaatgtgagtttcaacccgaggggtagcgtatgcttggatatttctctcaacttcagataattatcctgacattaattagaagagataaaatac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37445702 |
aggagtcaatgtgagtttcaacccgaggggtagcgtatgctgggatatttctctcaacttcagataattatcctgacattaattagaagagataaaatac |
37445801 |
T |
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| Q |
218 |
caaattaatgttgttcagtaaatgcctccatatacaaaacatgcatggtacnnnnnnnnnnnnnnnnagtgggagaaaatgaatgccttaatataatgca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
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| T |
37445802 |
aaaattaatgttgttcagtaaatgcctccatatacaaaacatgcatggtac--gtgtgtgtgtgtgtagtgggagataatgaatgccttaatataatgca |
37445899 |
T |
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| Q |
318 |
cgtaatattgatga |
331 |
Q |
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||||||||| |||| |
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| T |
37445900 |
cgtaatattaatga |
37445913 |
T |
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