View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19363_low_1 (Length: 518)

Name: NF19363_low_1
Description: NF19363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19363_low_1
NF19363_low_1
[»] chr6 (6 HSPs)
chr6 (389-486)||(31028552-31028643)
chr6 (90-147)||(31024780-31024837)
chr6 (90-147)||(31072677-31072735)
chr6 (176-232)||(31065347-31065403)
chr6 (141-228)||(31024867-31024954)
chr6 (469-500)||(31029299-31029330)
[»] chr8 (1 HSPs)
chr8 (90-147)||(33559833-33559890)


Alignment Details
Target: chr6 (Bit Score: 71; Significance: 6e-32; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 389 - 486
Target Start/End: Complemental strand, 31028643 - 31028552
Alignment:
Q  389 gcacttgatttcttgtcacttggaacttctgttggtgtccctgacccgtataatgaccggaaatataatcctcttgttttattaataagatatatttg 486  Q
    |||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31028643 gcacttgatttcttgtcacttggaacttctgtta------ctgacccgtataatgaccggaaatataatcctcttgttttattaataagatatatttg 31028552  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 31024780 - 31024837
Alignment:
Q  90 aatgaatgaagtatagaaaattgtaaattgttcaaaatttggttaaaacgagaagagg 147  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  31024780 aatgaatgaagtatagaaaattgtaaattgttcaaaaattggttaaaatgagaagagg 31024837  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 31072677 - 31072735
Alignment:
Q  90 aatgaatgaagtatagaaaattgtaaatt-gttcaaaatttggttaaaacgagaagagg 147  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||||||||    
T  31072677 aatgaatgaagcatagaaaattgtaaatttgttcaaaatttgtttaaaacgagaagagg 31072735  T

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Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 176 - 232
Target Start/End: Original strand, 31065347 - 31065403
Alignment:
Q  176 cagtcccacattgaaattctataactaatagacaccaaaagttacctataaaacaat 232  Q
    ||||||||||| |||| ||| |||||||||||||| |||||||||||||||||||||    
T  31065347 cagtcccacatcgaaactctgtaactaatagacacaaaaagttacctataaaacaat 31065403  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 228
Target Start/End: Original strand, 31024867 - 31024954
Alignment:
Q  141 gaagaggcatgtgtatataccatcctggagctcaacagtcccacattgaaattctataactaatagacaccaaaagttacctataaaa 228  Q
    |||||||||||||| |||||||| |||||| ||| |||||||| || |||| | | ||| | |||||||| |||  ||||||||||||    
T  31024867 gaagaggcatgtgtgtataccattctggagttcagcagtcccaaatcgaaactatgtaaattatagacacaaaactttacctataaaa 31024954  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Original strand, 31029299 - 31029330
Alignment:
Q  469 attaataagatatatttgagttaatgaaaatt 500  Q
    ||||||||||||||||||||||||||||||||    
T  31029299 attaataagatatatttgagttaatgaaaatt 31029330  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 33559833 - 33559890
Alignment:
Q  90 aatgaatgaagtatagaaaattgtaaattgttcaaaatttggttaaaacgagaagagg 147  Q
    ||||||||||| | |||||||||||||| |||||| |||||| ||| |||||||||||    
T  33559833 aatgaatgaagcagagaaaattgtaaatggttcaatatttgggtaagacgagaagagg 33559890  T

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