View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19363_low_2 (Length: 379)
Name: NF19363_low_2
Description: NF19363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19363_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 141 - 360
Target Start/End: Original strand, 36947970 - 36948189
Alignment:
| Q |
141 |
taaagacatgctagagacactgatgttggtttcaacacttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagca |
240 |
Q |
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| T |
36947970 |
taaagacatggtagagacactgatattggtttcaacccttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagca |
36948069 |
T |
|
| Q |
241 |
aacaacctatatcatgcaatgtttcaagcattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacat |
340 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
36948070 |
aacaacctatgtcatgcaatgtttcaagcattcattatcttcatcacaatatcattattcagttccattagttctattatcatactcttttgggcaacac |
36948169 |
T |
|
| Q |
341 |
ttggattaactagattggtg |
360 |
Q |
| |
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||||||||||| ||||||| |
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| T |
36948170 |
ttggattaactgaattggtg |
36948189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 12 - 219
Target Start/End: Original strand, 36971511 - 36971718
Alignment:
| Q |
12 |
acagagcaatgaaaaagaattacaccaacagagtaaagaaaaaggcttgaatagatacaaggacagaacagaaaaagtccccaacgacaatttaccaaga |
111 |
Q |
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| T |
36971511 |
acagagcaatgaaaaagaattacaccaacagagtaaagaaaaaggcttgaatagatacaaggacagaacagaaaaagtccccatcgacaatttaccaaga |
36971610 |
T |
|
| Q |
112 |
attgttgtggtaaattccgacgacgcatataaagacatgctagagacactgatgttggtttcaacacttataatcactgcatcagtagcagcatgttttg |
211 |
Q |
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| T |
36971611 |
attgttgcggtaaattccgaccacacatataaagacatggtagagacactgatattggtttcaacacttataatcactgcatcagtagcagcatgttttg |
36971710 |
T |
|
| Q |
212 |
ctgttcca |
219 |
Q |
| |
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||||||| |
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| T |
36971711 |
gtgttcca |
36971718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 138 - 360
Target Start/End: Complemental strand, 37069992 - 37069770
Alignment:
| Q |
138 |
atataaagacatgctagagacactgatgttggtttcaacacttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaa |
237 |
Q |
| |
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||||| ||||| | |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37069992 |
atatagagacagggtagagacactcacattggtttcaacacttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaa |
37069893 |
T |
|
| Q |
238 |
gcaaacaacctatatcatgcaatgtttcaagcattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaa |
337 |
Q |
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||||||||||||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
37069892 |
gcaaacaacctatgtcatgcaatgttccaagctttcattatcttcatcacaatatcattgttcagttccattagttctactatcatactctttttggcaa |
37069793 |
T |
|
| Q |
338 |
catttggattaactagattggtg |
360 |
Q |
| |
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| ||||||||||| ||||||| |
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| T |
37069792 |
aacttggattaactgaattggtg |
37069770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 37079738 - 37079553
Alignment:
| Q |
152 |
tagagacactgatgttggtttcaacacttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctata |
251 |
Q |
| |
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|||||||||| | ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37079738 |
tagagacactcacattggtttcaacccttataatcactgcttcagtagcagcatgttttgctgttccaggtgaagcggatggaaaagcaaacaacctatg |
37079639 |
T |
|
| Q |
252 |
tcatgcaatgtttcaagcattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaa |
337 |
Q |
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|||||||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37079638 |
tcatgcaatgttccatgttttcattatattcatcacaatatcattgttcagttccattagttctactatcatactcttttgggcaa |
37079553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 169 - 351
Target Start/End: Original strand, 36956074 - 36956256
Alignment:
| Q |
169 |
gtttcaacacttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatatcatgcaatgtttcaag |
268 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |||| |||||||||||| || | |
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| T |
36956074 |
gtttcaacacttataatcacagcatcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacaatctatgtcatgcaatgttccatg |
36956173 |
T |
|
| Q |
269 |
cattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacatttggattaact |
351 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||| |
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| T |
36956174 |
ttttcattatcttcatcacaatatcattgttcagttcaattagtgctaccatcatactcttttgggcaacacttggattaact |
36956256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 169 - 351
Target Start/End: Original strand, 36935220 - 36935402
Alignment:
| Q |
169 |
gtttcaacacttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatatcatgcaatgtttcaag |
268 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| || |||||| |||||||||| ||||||||| |||| |||| |||| |||||||||| | |
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| T |
36935220 |
gtttcaacacttataatcactgcttcagtagcagcatgtttagccgttccatgtgaagcagaaggaaaagcacacaatctatgtcatacaatgtttcatg |
36935319 |
T |
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| Q |
269 |
cattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacatttggattaact |
351 |
Q |
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| |||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| |
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| T |
36935320 |
ctttcattatcttcatcacagtatcattgttcagttccattagtgctaccatcatactcttttgggcaacatttgggttaact |
36935402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 169 - 351
Target Start/End: Complemental strand, 12493750 - 12493568
Alignment:
| Q |
169 |
gtttcaacacttataatcactgcatcagtagcagcatgttttgctgttccaggtgaagcagatggaaaagcaaacaacctatatcatgcaatgtttcaag |
268 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||| ||| ||||| |||||||||||| || | |
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| T |
12493750 |
gtttcaacacttataatcactgcttcagtagcagcatgtttagctgttccaggtgaagcagaaggaaaagcacacagcctatgtcatgcaatgttccatg |
12493651 |
T |
|
| Q |
269 |
cattcattatcttcatcacaatatcattgttcagttccattagttctattatcatactcttttgggcaacatttggattaact |
351 |
Q |
| |
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| ||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||| |||| |||||| |
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| T |
12493650 |
ctttcattatcttcatcacaatatcgttgttcagttccattagtgctactatcatactcttttgggcaacacttgggttaact |
12493568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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