View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19363_low_3 (Length: 373)
Name: NF19363_low_3
Description: NF19363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19363_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 13 - 357
Target Start/End: Complemental strand, 25545852 - 25545485
Alignment:
| Q |
13 |
ataattctaactatgtacagctcttttaattttaatactgtaatttctctttctcatatcattaacaaaagatgatattttaagaatttaatttatatac |
112 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25545852 |
ataattctaactatgtacaactcttttaattttaatactgtaatttctctttctcatatcattaacaaaagatgatattgtaagaatttaatttatatac |
25545753 |
T |
|
| Q |
113 |
actgtcactctgccatcgtaaatgtttttcacattgttagtcaatcataatcatcagatcattga--tttgttttttactttaaccataactacttcaat |
210 |
Q |
| |
|
|| |||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
25545752 |
acggtcactctaccatcgtaaatgtttttcatattgttagtcaatcataatcatcagatcattgattttttttttttactttaaccataactacttcaat |
25545653 |
T |
|
| Q |
211 |
aaactttatgccgcgaccgttacataaactatcacaaaaatgtcgtcgcaaataaaagaggaacagattgcacaaa---------------------ccg |
289 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
25545652 |
aaactttatgccgtgaccgttacataaactatcacaaaaacgtcgtcgcaaataaaagagggacagattgcacaaacctttgcataataccttccccccg |
25545553 |
T |
|
| Q |
290 |
ttggcctaattcatagaagtgatatttggatatatttctcaattttgataatcctatctgctaccaat |
357 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25545552 |
ttggcctaattcattgaagtgatatttggatatatttctcaattttgataatcctatctgctaccaat |
25545485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University