View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19364_low_1 (Length: 391)
Name: NF19364_low_1
Description: NF19364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19364_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 372
Target Start/End: Original strand, 40783268 - 40783632
Alignment:
| Q |
1 |
catctacagtgccactgccaggtatatattactttatttcctcttcactagt--agtagttggtattttttaaccaaaaaagtagcatatggaaaatgtt |
98 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| || | | | ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
40783268 |
catctacagtgccactgccaggtatatattactttatttccttttttcctcttcactagttggtattttttaaccaaaaaagtagcatatgaaaaatgtt |
40783367 |
T |
|
| Q |
99 |
ttgctaatatccccattgacgtgtatcaccttgagataaagagagagaaagnnnnnnnnnnnnnnnngatgtaatagatgcgatagattgatgatgtgat |
198 |
Q |
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| T |
40783368 |
ttgctaatatccccattgacgtgtatcaccttgagataaaaagagaaaaaaaaa--------------atgtaatagatgcgatagattgatgatgtgat |
40783453 |
T |
|
| Q |
199 |
aagaagagagaagacatnnnnnnnn-----tgatgtgttgaatgaatatagaataaaaatgatatacatatatcattgttgtttaatgattgagtatata |
293 |
Q |
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| T |
40783454 |
aagaagagagaagacatagaagaaaaaaaatgatgtgttgaataaatatagaataaaaatgatatacatatatcattgttgtttaatgattgagtatata |
40783553 |
T |
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| Q |
294 |
ttttgtaaacaataattgagtaatattgagaattataagcaaaaggagagtacttgacataaattattcattagagtat |
372 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40783554 |
tttcgtaaacaataattgagtaatattgagaattataagcaaaaggagagtagttgacataaattattcattagagtat |
40783632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 51169683 - 51169642
Alignment:
| Q |
166 |
gatgtaatagatgcgatagattgatgatgtgataagaagaga |
207 |
Q |
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| T |
51169683 |
gatgtaatagatgtgataaattgatgatgtgataagaagaga |
51169642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 42147128 - 42147164
Alignment:
| Q |
172 |
atagatgcgatagattgatgatgtgataagaagagag |
208 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
42147128 |
atagatgtaatagattgatgatgtgataagaagagag |
42147164 |
T |
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