View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19364_low_3 (Length: 278)
Name: NF19364_low_3
Description: NF19364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19364_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 19 - 268
Target Start/End: Complemental strand, 6372818 - 6372578
Alignment:
| Q |
19 |
cttttgccggttggctggaagggaaactgtagagttgtcatcttagtgagtgcatcagccatgcatttcttaggggaagcagattcaatgccagcattaa |
118 |
Q |
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| T |
6372818 |
cttttgccggttggctggaagggaaactgtatagttgtcgtcttagtgagtgcatcagccatgcatttcttagaggaagcagattcaatgccagcattaa |
6372719 |
T |
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| Q |
119 |
aagtctttccgttggtagtttcaaaaggtacagcaaatggtgttcttgtactgttaagacgccgaaatttctcaggtgaagcacattcaacaccaccatt |
218 |
Q |
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| T |
6372718 |
aagtctttccgttggtagtttcaaaaggtacagcaaatggtgttcttgt---------acgccgaaatttctcaggtgaagcacattcaacaccaccatt |
6372628 |
T |
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| Q |
219 |
aggaaggagtattaacttcttcnnnnnnnttgtttgaattctttcctttg |
268 |
Q |
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| T |
6372627 |
aggaaggagtattgacttcttcaaaaaaattgtttgaattctttcctttg |
6372578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 6359376 - 6359153
Alignment:
| Q |
19 |
cttttgccggttggctggaagggaaactgtagagttgtcatcttagtgagtgcatcagccatgcatttcttaggggaagcagattcaatgccagcattaa |
118 |
Q |
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| T |
6359376 |
cttttgccggttggttggtagggaaactgtatagctgtggtcttagtgactgtatcagctatgagcagctcaggggaatcagattcaacaccagcattaa |
6359277 |
T |
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| Q |
119 |
aagtctttccgttggtagtttcaaaaggtacagcaaatggtgttcttgtactgttaagacgccgaaatttctcaggtgaagcacattcaacaccaccatt |
218 |
Q |
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| T |
6359276 |
aagtcttttcattggtagtttcaacaggtacagctaatggtgttcctatattgttaagatcctgaaatttctcatataaaccacattcaacaccaccatc |
6359177 |
T |
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| Q |
219 |
ag--gaaggagtattaacttcttc |
240 |
Q |
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| T |
6359176 |
agaagaagcagtattgacttcttc |
6359153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 85 - 211
Target Start/End: Complemental strand, 6367207 - 6367081
Alignment:
| Q |
85 |
ttcttaggggaagcagattcaatgccagcattaaaagtctttccgttggtagtttcaaaaggtacagcaaatggtgttcttgtactgttaagacgccgaa |
184 |
Q |
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| T |
6367207 |
ttctcaggggaagcagatttaaaaccagcattaaaagtttttccattagtagtttcaaaagttagagctaaaggtgttcttatactgtcaagactccgaa |
6367108 |
T |
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| Q |
185 |
atttctcaggtgaagcacattcaacac |
211 |
Q |
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| T |
6367107 |
atttctcaggtgaagcacattcaacac |
6367081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 220
Target Start/End: Complemental strand, 6428365 - 6428210
Alignment:
| Q |
62 |
tagtgagtgcatcagccatgcatttcttaggggaagcagattcaatgccagcattaaaagtctttccgttggtagtttcaaaaggtacagcaaatggtgt |
161 |
Q |
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| T |
6428365 |
tagtgactgcatcagccatgacatgctcgggggaagcagattcaacaccagcattagaagtcttctcattggtattttcgaaaggtacagctaatggtgt |
6428266 |
T |
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| Q |
162 |
tcttgtactgttaagacgccgaaatttctcaggtgaagcacattcaacaccaccattag |
220 |
Q |
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| T |
6428265 |
tcttatagtgtcaagcttccgaaatttctca---gaaccgcattcaacaccgccattag |
6428210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 6420954 - 6420853
Alignment:
| Q |
144 |
aggtacagcaaatggtgttcttgtactgttaagacgccgaa------atttctcaggtgaagcacattcaacaccaccattaggaaggagtattaacttc |
237 |
Q |
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| T |
6420954 |
aggtacagctaatggtgttcttatactgtcaagacgccgaacccgaaatgtctcaggtgaaccacagtcaacgccaccatta-gaagcagtattgacttc |
6420856 |
T |
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| Q |
238 |
ttc |
240 |
Q |
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||| |
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| T |
6420855 |
ttc |
6420853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 13644796 - 13644844
Alignment:
| Q |
172 |
ttaagacgccgaaatttctcaggtgaagcacattcaacaccaccattag |
220 |
Q |
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| T |
13644796 |
ttaagacgctgaaatttctcagatgaaccgcattcaacaccaccattag |
13644844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 13644768 - 13644722
Alignment:
| Q |
171 |
gttaagacgccgaaatttctcaggtgaagcacattcaacaccaccat |
217 |
Q |
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| T |
13644768 |
gttaagatgctgaaatttgtcaggtgaaccacattcaacaccaccat |
13644722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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