View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19364_low_5 (Length: 201)
Name: NF19364_low_5
Description: NF19364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19364_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 19 - 187
Target Start/End: Complemental strand, 44064208 - 44064040
Alignment:
| Q |
19 |
caagtcgattggtaaacttgtgttgattggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttgaaaggggttcgaaa |
118 |
Q |
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| T |
44064208 |
caagtcgattggtaaacttgtgttgatcggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttgaaaggggttcgaaa |
44064109 |
T |
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| Q |
119 |
tttcgttgatgtggggaagtgtttttggttatgatagaaaaagcgattaagaacgcttatagacctttg |
187 |
Q |
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| T |
44064108 |
tttcgttgatgtggggaagtgtttttggttatgatagaaaaagcgattaagaacgcttatagacctttg |
44064040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 4e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 19 - 168
Target Start/End: Complemental strand, 40913049 - 40912891
Alignment:
| Q |
19 |
caagtcgattggtaaacttgtgttgattggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttgaaaggggttcgaaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
40913049 |
caagtcgattggtaaacttatgttgattggaatgagatgatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttgaaagggaatcgaaa |
40912950 |
T |
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| Q |
119 |
tttcgt--------tgatg-tggggaagtgtttttggttatgatagaaaaagcgattaa |
168 |
Q |
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| T |
40912949 |
tttcgttgcagtggtgatgatgggtaagtgcttttggttatgatagaaaaagcgattaa |
40912891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 19 - 171
Target Start/End: Original strand, 3014135 - 3014296
Alignment:
| Q |
19 |
caagtcgattggtaaacttgtgttgattggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttgaaaggggttcgaaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |
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| T |
3014135 |
caagtcgattggtaaacttatgttgattggaatgagaagatgttgccattgatagaaccttgggaagtgtaacacgcgagaatttgaaaggaaatcgaaa |
3014234 |
T |
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| Q |
119 |
tttcgt--------tgatg-tggggaagtgtttttggttatgatagaaaaagcgattaagaa |
171 |
Q |
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|||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||| |
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| T |
3014235 |
tttcgttgtagtggtgatgatgggtaagtgcttttggttatgatagaaaaagcgattaagaa |
3014296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 13887828 - 13887935
Alignment:
| Q |
19 |
caagtcgattggtaaacttgtgttgattggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttgaaaggggttcgaaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||| |||||| |
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| T |
13887828 |
caagtcgattggtaaacttatgttgattggaatgagatgatgttgccatagatagaaccttgggaagtgtaacgcgcgagaatttgaaagggaatcgaaa |
13887927 |
T |
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| Q |
119 |
tttcgttg |
126 |
Q |
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|||||||| |
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| T |
13887928 |
tttcgttg |
13887935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 19 - 126
Target Start/End: Original strand, 13007454 - 13007561
Alignment:
| Q |
19 |
caagtcgattggtaaacttgtgttgattggaatgagatgatgttgccattgatagaaccttcggaagtgtaacacgtgagaatttgaaaggggttcgaaa |
118 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| |||||| |
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| T |
13007454 |
caagtcgattggtaaacttatgttgattggaatgagatgatgttgccatagatagaaccttgggaagtgtaacacgcgagaatttgaaagggaatcgaaa |
13007553 |
T |
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| Q |
119 |
tttcgttg |
126 |
Q |
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|||||||| |
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| T |
13007554 |
tttcgttg |
13007561 |
T |
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