View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19365_high_7 (Length: 220)

Name: NF19365_high_7
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19365_high_7
NF19365_high_7
[»] chr1 (2 HSPs)
chr1 (138-180)||(2130749-2130791)
chr1 (137-185)||(11845346-11845394)
[»] chr8 (2 HSPs)
chr8 (138-180)||(3883362-3883404)
chr8 (138-180)||(10610016-10610058)
[»] chr4 (1 HSPs)
chr4 (138-180)||(32216961-32217003)
[»] chr2 (1 HSPs)
chr2 (136-186)||(13776069-13776119)


Alignment Details
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 2130791 - 2130749
Alignment:
Q  138 ttgaatgatgaacctatatggtattgtttgaaccatgtaatct 180  Q
    ||||||| |||| ||||||||||||||||||||||||||||||    
T  2130791 ttgaatggtgaatctatatggtattgtttgaaccatgtaatct 2130749  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 11845394 - 11845346
Alignment:
Q  137 gttgaatgatgaacctatatggtattgtttgaaccatgtaatctttgat 185  Q
    |||||||||| ||| |||||  |||||||||||||||||||||| ||||    
T  11845394 gttgaatgatcaacatatataatattgtttgaaccatgtaatctatgat 11845346  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Complemental strand, 3883404 - 3883362
Alignment:
Q  138 ttgaatgatgaacctatatggtattgtttgaaccatgtaatct 180  Q
    ||||||| ||||||| ||||||||||||||||| |||||||||    
T  3883404 ttgaatggtgaacctctatggtattgtttgaacaatgtaatct 3883362  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 10610016 - 10610058
Alignment:
Q  138 ttgaatgatgaacctatatggtattgtttgaaccatgtaatct 180  Q
    ||||||||||||||| |||| ||||||||||||||| ||||||    
T  10610016 ttgaatgatgaacctctatgatattgtttgaaccatataatct 10610058  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 180
Target Start/End: Original strand, 32216961 - 32217003
Alignment:
Q  138 ttgaatgatgaacctatatggtattgtttgaaccatgtaatct 180  Q
    ||||||||||||| | |||||||||||| ||||||||||||||    
T  32216961 ttgaatgatgaacttctatggtattgttcgaaccatgtaatct 32217003  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 186
Target Start/End: Complemental strand, 13776119 - 13776069
Alignment:
Q  136 agttgaatgatgaacctatatggtattgtttgaaccatgtaatctttgatg 186  Q
    |||||||||||||| || |||  |||||||||||||||||||||| |||||    
T  13776119 agttgaatgatgaatctctataatattgtttgaaccatgtaatctatgatg 13776069  T

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