View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19365_low_2 (Length: 439)
Name: NF19365_low_2
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19365_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 15 - 234
Target Start/End: Complemental strand, 47263146 - 47262927
Alignment:
| Q |
15 |
ataacattctctagcatatgtgggcaaagaaagcatctataaattagtgcttttttgaaaataatcattttaaatattgatttacaatatcaatttgttt |
114 |
Q |
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| T |
47263146 |
ataacattctctagcatatgtgggcaaagaaagcatctataaattagtgcttttttgaaaataatcattttaaatattgatttacaatatcaatttgttt |
47263047 |
T |
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| Q |
115 |
aatattcaaaattgaataaataaccattatcctcttacatgagacattgtcatcatggttcctaaacgagtaaaaaatacaaattatttctagctttaga |
214 |
Q |
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| T |
47263046 |
aatattcaaaattgaataaataaccattatcctcttacatgagacattgtcatcatggttcctaaacgagtaaaaaatgcaaattaattctagctttaga |
47262947 |
T |
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| Q |
215 |
gtaagtgaagtttagtagaa |
234 |
Q |
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| T |
47262946 |
gtaagtgaagtttagtagaa |
47262927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 233 - 427
Target Start/End: Complemental strand, 47262836 - 47262644
Alignment:
| Q |
233 |
aataaaaccgaatctaaatgaatctccacttttaatttgttttctcttacttccgtaacnnnnnnnnnnn--atactcttatcttcaagttggattatct |
330 |
Q |
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| T |
47262836 |
aataaaaccgaatctaaatgaatctccactttt----tgttttctcttacttccgtaactttttttttttttatactcttatcttcaagttggattatct |
47262741 |
T |
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| Q |
331 |
atgatttgtgaatttatgcaggttctgttcatttagatttatgtttatatccattttcattcaaatctacctctatggatgtgatctttctgtgctc |
427 |
Q |
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| T |
47262740 |
atgatttgtgaatttatgcaggttctgttcatttagatttatgtttatatccattttcattcaaatctacctctatggatgtgatctttctgtgctc |
47262644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 364 - 424
Target Start/End: Complemental strand, 37466101 - 37466042
Alignment:
| Q |
364 |
tagatttatgtttatatccattttcattcaaatctacctctatggatgtgatctttctgtg |
424 |
Q |
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| T |
37466101 |
tagatttatgttcatatccattt-cattcaaatctacttctatgaatgtgatttttctgtg |
37466042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 322 - 387
Target Start/End: Complemental strand, 9296758 - 9296692
Alignment:
| Q |
322 |
ggattatctatgatttgtgaattt-atgcaggttctgttcatttagatttatgtttatatccatttt |
387 |
Q |
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| T |
9296758 |
ggattatctatgatttgggaatttgatgcaggttctgtttatttaaatttatgttcatatccatttt |
9296692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 312 - 427
Target Start/End: Complemental strand, 9286021 - 9285910
Alignment:
| Q |
312 |
tcttcaagttggattatctatgatttgtgaattt-atgcaggttctgttcatttagatttatgtttatatccattttcattcaaatctacctctatggat |
410 |
Q |
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| T |
9286021 |
tcttcaagctggaatatctatgagttgggaattttatgcaggttctgttcattta----aatgttcatatccatttttattcaaatct-cttatatacat |
9285927 |
T |
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| Q |
411 |
gtgatctttctgtgctc |
427 |
Q |
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| T |
9285926 |
gtgatttttctgtgctc |
9285910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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