View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19365_low_3 (Length: 433)

Name: NF19365_low_3
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19365_low_3
NF19365_low_3
[»] chr1 (16 HSPs)
chr1 (222-416)||(26837814-26838015)
chr1 (5-169)||(26837653-26837817)
chr1 (94-145)||(30847720-30847771)
chr1 (107-147)||(42004960-42005000)
chr1 (88-155)||(7918205-7918272)
chr1 (90-145)||(34712379-34712434)
chr1 (97-158)||(10380784-10380843)
chr1 (112-146)||(23440017-23440051)
chr1 (111-145)||(46348400-46348434)
chr1 (94-147)||(373053-373106)
chr1 (92-145)||(23804436-23804489)
chr1 (107-147)||(48415738-48415779)
chr1 (107-143)||(6573999-6574035)
chr1 (97-145)||(9656767-9656815)
chr1 (98-142)||(12611977-12612021)
chr1 (90-158)||(17754306-17754374)
[»] chr4 (13 HSPs)
chr4 (90-158)||(18513237-18513305)
chr4 (97-150)||(44081580-44081633)
chr4 (107-144)||(49659536-49659573)
chr4 (107-147)||(3144665-3144705)
chr4 (111-147)||(16303283-16303319)
chr4 (110-146)||(50848319-50848355)
chr4 (111-145)||(37203272-37203306)
chr4 (111-144)||(6273953-6273986)
chr4 (105-153)||(999359-999407)
chr4 (96-148)||(20119950-20120002)
chr4 (107-147)||(20743291-20743331)
chr4 (107-135)||(23386164-23386192)
chr4 (110-158)||(47191009-47191057)
[»] chr3 (11 HSPs)
chr3 (107-147)||(15864839-15864879)
chr3 (96-148)||(40150573-40150625)
chr3 (96-147)||(20691325-20691376)
chr3 (107-153)||(25074789-25074835)
chr3 (96-145)||(49505156-49505205)
chr3 (89-145)||(8164138-8164194)
chr3 (107-147)||(12704670-12704710)
chr3 (107-147)||(14223866-14223906)
chr3 (111-147)||(25326432-25326468)
chr3 (107-147)||(27903638-27903678)
chr3 (105-145)||(29508452-29508492)
[»] chr7 (10 HSPs)
chr7 (107-147)||(23751906-23751946)
chr7 (107-146)||(29812677-29812716)
chr7 (108-146)||(46644701-46644739)
chr7 (107-147)||(4017807-4017847)
chr7 (90-146)||(15902829-15902885)
chr7 (91-155)||(23128658-23128722)
chr7 (111-145)||(11831440-11831474)
chr7 (107-144)||(13427585-13427622)
chr7 (105-154)||(38134417-38134466)
chr7 (95-139)||(46550792-46550836)
[»] chr6 (14 HSPs)
chr6 (107-147)||(6389749-6389789)
chr6 (105-145)||(10842540-10842580)
chr6 (111-147)||(17168480-17168516)
chr6 (107-147)||(19602194-19602234)
chr6 (91-153)||(28862121-28862184)
chr6 (111-145)||(7938124-7938158)
chr6 (91-145)||(9195751-9195805)
chr6 (84-145)||(7086803-7086864)
chr6 (90-143)||(9024172-9024225)
chr6 (94-143)||(13364705-13364754)
chr6 (111-148)||(18252768-18252805)
chr6 (96-145)||(26178683-26178732)
chr6 (111-147)||(7625128-7625164)
chr6 (107-147)||(34446571-34446611)
[»] chr5 (11 HSPs)
chr5 (105-153)||(2577191-2577239)
chr5 (108-155)||(4344740-4344787)
chr5 (107-158)||(39696012-39696063)
chr5 (107-146)||(43554528-43554567)
chr5 (96-158)||(12927649-12927711)
chr5 (105-146)||(16881143-16881184)
chr5 (96-155)||(32630737-32630796)
chr5 (90-153)||(38749559-38749622)
chr5 (111-147)||(24906318-24906354)
chr5 (107-147)||(42469227-42469267)
chr5 (84-148)||(43208264-43208328)
[»] chr2 (15 HSPs)
chr2 (107-147)||(23354665-23354705)
chr2 (107-153)||(24011036-24011082)
chr2 (96-148)||(18570977-18571029)
chr2 (107-147)||(23355008-23355048)
chr2 (107-147)||(37986785-37986825)
chr2 (107-146)||(25544488-25544527)
chr2 (107-153)||(10535772-10535818)
chr2 (111-145)||(20539691-20539725)
chr2 (111-145)||(30335425-30335459)
chr2 (96-141)||(2423881-2423926)
chr2 (107-143)||(11308017-11308053)
chr2 (107-155)||(12748682-12748730)
chr2 (105-145)||(30527606-30527646)
chr2 (105-145)||(36281693-36281733)
chr2 (107-147)||(38919212-38919252)
[»] chr8 (8 HSPs)
chr8 (107-146)||(39820436-39820475)
chr8 (105-145)||(12559117-12559157)
chr8 (107-146)||(13845241-13845280)
chr8 (111-153)||(20873069-20873111)
chr8 (107-152)||(8017487-8017532)
chr8 (105-153)||(9936814-9936862)
chr8 (107-147)||(13009506-13009546)
chr8 (107-147)||(35431153-35431193)
[»] scaffold0049 (1 HSPs)
scaffold0049 (90-143)||(56932-56985)
[»] scaffold0037 (1 HSPs)
scaffold0037 (111-152)||(102906-102947)
[»] scaffold1528 (1 HSPs)
scaffold1528 (90-158)||(1030-1098)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 4e-82; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 222 - 416
Target Start/End: Original strand, 26837814 - 26838015
Alignment:
Q  222 ttgttcatatgtttgtgttcggtgttcgacatcatttttgtttctcttctctcnnnnnnn-------gatatgtggttggtactttgcaaagcgtgtgta 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||              |||||||||||||||||||||||||||||||||    
T  26837814 ttgttcatatgtttgtgttcggtgttcgacatcatttttgtttctcttctctcaaaaaaaaaaaaaagatatgtggttggtactttgcaaagcgtgtgta 26837913  T
Q  315 tttttatttcaattggactagacattgcaccttccctcttacttccacaaaacttactcttgattcctatattaaggttgtcaacatgtcgtcgtcttct 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26837914 tttttatttcaattggactagacattgcaccttccctcttacttccacaaaacttactcttgattcctatattaaggttgtcaacatgtcgtcgtcttct 26838013  T
Q  415 ct 416  Q
    ||    
T  26838014 ct 26838015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 5 - 169
Target Start/End: Original strand, 26837653 - 26837817
Alignment:
Q  5 gaccacagcttatataatatttaccacttgtatcataccctccttgaattatgtgggtcttggtgccagatatgtgttggtgtttgacacaacactgact 104  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  26837653 gaccacagcttatataatatttaccacttgtatcatacactccttgaattatgtgggtcttggtgccagacatgcgttggtgtttgacacaacactgact 26837752  T
Q  105 catatgattacactaaattatatcattttttcaaattattatcgatgtcagtgttcatatattgt 169  Q
    ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||    
T  26837753 catataattacactaaattatattattttttcaaattattattgatgtcagtgttcatatgttgt 26837817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 30847720 - 30847771
Alignment:
Q  94 caacactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    |||||||||| |||||||||||| | |||||| |||||||||||||||||||    
T  30847720 caacactgacacatatgattacattgaattatgtcattttttcaaattatta 30847771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 42004960 - 42005000
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||||| ||||||| |||||||||||||    
T  42004960 tatgattacactaaattatgtcattttctcaaattattatc 42005000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 7918205 - 7918272
Alignment:
Q  88 ttgacacaacactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcag 155  Q
    ||||||| |||||||| ||||| |||||||| |||||| | ||||| |||||||||||  ||||||||    
T  7918205 ttgacacgacactgacacatataattacactgaattatgtgattttctcaaattattagtgatgtcag 7918272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 34712379 - 34712434
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    ||||| |||||||| ||||| ||||||||||||||| | ||||| |||||||||||    
T  34712379 gacacgacactgacacatataattacactaaattatgttattttctcaaattatta 34712434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 158
Target Start/End: Complemental strand, 10380843 - 10380784
Alignment:
Q  97 cactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcagtgt 158  Q
    ||||||| | |||||||||||||||||||||  | || |||||||||||| |||||||||||    
T  10380843 cactgacacctatgattacactaaattatat--tattctcaaattattattgatgtcagtgt 10380784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 146
Target Start/End: Complemental strand, 23440051 - 23440017
Alignment:
Q  112 ttacactaaattatatcattttttcaaattattat 146  Q
    |||||||||||||||||||||| ||||||||||||    
T  23440051 ttacactaaattatatcattttctcaaattattat 23440017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 46348400 - 46348434
Alignment:
Q  111 attacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||||| |||||||||||||||||    
T  46348400 attacactaaattatatgattttttcaaattatta 46348434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 373106 - 373053
Alignment:
Q  94 caacactgactcatatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||| ||| |||||||||| ||||||| || ||||||| |||||||||||||    
T  373106 caacaccgacacatatgattaaactaaatcatgtcattttctcaaattattatc 373053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 23804489 - 23804436
Alignment:
Q  92 cacaacactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    ||||||| |||| ||||| |||||| |||||||||| ||||| |||||||||||    
T  23804489 cacaacaatgacacatataattacattaaattatataattttatcaaattatta 23804436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 48415738 - 48415779
Alignment:
Q  107 tatgattacactaaattatatca-ttttttcaaattattatc 147  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  48415738 tatgattacactaaattatatcatttttttaaaattattatc 48415779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 6574035 - 6573999
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattat 143  Q
    ||||||||||||||||||||||||| | |||||||||    
T  6574035 tatgattacactaaattatatcattgtctcaaattat 6573999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Original strand, 9656767 - 9656815
Alignment:
Q  97 cactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    |||||| |||| |||||||| | ||||| ||||||||||||||||||||    
T  9656767 cactgattcatgtgattacattcaattaaatcattttttcaaattatta 9656815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 12612021 - 12611977
Alignment:
Q  98 actgactcatatgattacactaaattatatcattttttcaaatta 142  Q
    |||||| |||||||||||||| |||||| | ||||||||||||||    
T  12612021 actgacacatatgattacactcaattatgtgattttttcaaatta 12611977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 17754374 - 17754306
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcagtgt 158  Q
    ||||| |||||||| |||||  ||||||| |||||| | ||||||||||||||||| || |||| ||||    
T  17754374 gacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 17754306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 90 - 158
Target Start/End: Original strand, 18513237 - 18513305
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcagtgt 158  Q
    |||||||||||||| |||||||||||| | |||||| ||||||| |||||||||||||| |||| ||||    
T  18513237 gacacaacactgacacatatgattacattgaattatgtcattttctcaaattattatcggtgtctgtgt 18513305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 150
Target Start/End: Original strand, 44081580 - 44081633
Alignment:
Q  97 cactgactcatatgattacactaaattatatcattttttcaaattattatcgat 150  Q
    ||||||| ||||| |||||| |||||||||| ||||||||||||||||| ||||    
T  44081580 cactgacacatataattacattaaattatatgattttttcaaattattaacgat 44081633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 107 - 144
Target Start/End: Original strand, 49659536 - 49659573
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattatt 144  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  49659536 tatgattacactaaattatatcattttctcaaattatt 49659573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 3144665 - 3144705
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||||||||||||| | |||||||||||    
T  3144665 tatgattacactaaattatatcattttctgaaattattatc 3144705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 16303283 - 16303319
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||||||||||||||| |||||||    
T  16303283 attacactaaattatatcattttttcaaaatattatc 16303319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 110 - 146
Target Start/End: Original strand, 50848319 - 50848355
Alignment:
Q  110 gattacactaaattatatcattttttcaaattattat 146  Q
    ||||||||| |||||||||||||||||||||||||||    
T  50848319 gattacactgaattatatcattttttcaaattattat 50848355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 37203306 - 37203272
Alignment:
Q  111 attacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||| |||||||||||||||||||    
T  37203306 attacactaaattatgtcattttttcaaattatta 37203272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 144
Target Start/End: Complemental strand, 6273986 - 6273953
Alignment:
Q  111 attacactaaattatatcattttttcaaattatt 144  Q
    ||||||||||||||||||||||| ||||||||||    
T  6273986 attacactaaattatatcattttctcaaattatt 6273953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 999359 - 999407
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    ||||| ||||||||||||||||| ||||  ||||||||||| |||||||    
T  999359 catataattacactaaattatatgatttactcaaattattagcgatgtc 999407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 20120002 - 20119950
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattattatcg 148  Q
    ||||| || ||| |||||||| |||||||| ||||||| ||||||||||||||    
T  20120002 acactaacacatgtgattacattaaattatttcattttctcaaattattatcg 20119950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 20743291 - 20743331
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||||| |||||| ||||||| |||||||||||||    
T  20743291 tatgattacactgaattatgtcattttctcaaattattatc 20743331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 135
Target Start/End: Complemental strand, 23386192 - 23386164
Alignment:
Q  107 tatgattacactaaattatatcatttttt 135  Q
    |||||||||||||||||||||||||||||    
T  23386192 tatgattacactaaattatatcatttttt 23386164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 47191009 - 47191057
Alignment:
Q  110 gattacactaaattatatcattttttcaaattattatcgatgtcagtgt 158  Q
    |||||||||||||||| |||||||  |||||||||||| ||||| ||||    
T  47191009 gattacactaaattatgtcattttcgcaaattattatccatgtcggtgt 47191057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 15864879 - 15864839
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15864879 tatgattacactaaattatatcattttttcaaattattatc 15864839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Original strand, 40150573 - 40150625
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattattatcg 148  Q
    |||| ||| |||||||||||| | |||||||||||||| ||||||||||||||    
T  40150573 acaccgacacatatgattacattgaattatatcattttctcaaattattatcg 40150625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 20691376 - 20691325
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||| ||| |||||||||||||| |||||| ||||||| |||||||||||||    
T  20691376 acaccgacacatatgattacactgaattatgtcattttctcaaattattatc 20691325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 25074835 - 25074789
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    |||||||||||| |||||| ||||||| |||||||||||||| ||||    
T  25074835 tatgattacactcaattatgtcattttctcaaattattatcggtgtc 25074789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 49505156 - 49505205
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    |||||||| ||||| ||||||||||||||| | ||||| |||||||||||    
T  49505156 acactgacacatataattacactaaattatgtgattttctcaaattatta 49505205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 8164138 - 8164194
Alignment:
Q  89 tgacacaacactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    ||||||| ||||||  ||| ||||||||||||| || || |||||||||||||||||    
T  8164138 tgacacatcactgatacatgtgattacactaaaatacatgattttttcaaattatta 8164194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 12704670 - 12704710
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||| | |||||| |||||||||||||||||||||    
T  12704670 tatgattacattgaattatgtcattttttcaaattattatc 12704710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 14223866 - 14223906
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||| |||||||||||||||| |||| |||||||||||||    
T  14223866 tatgaatacactaaattatatcgttttctcaaattattatc 14223906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 25326468 - 25326432
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||| ||||||| |||||||||||    
T  25326468 attacactaaattatattatttttttaaattattatc 25326432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 27903678 - 27903638
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||| ||||||||||| |||| |||||||||||||    
T  27903678 tatgattacattaaattatatcgttttctcaaattattatc 27903638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 29508492 - 29508452
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattatta 145  Q
    ||||| |||||||| |||||||| |||||||||||||||||    
T  29508492 catataattacactgaattatatgattttttcaaattatta 29508452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 23751946 - 23751906
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  23751946 tatgattacactaaattatatcattttatcaaattattatc 23751906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 146
Target Start/End: Original strand, 29812677 - 29812716
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattat 146  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  29812677 tatgattacactaaattatatcattttctcaaattattat 29812716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 46644701 - 46644739
Alignment:
Q  108 atgattacactaaattatatcattttttcaaattattat 146  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  46644701 atgattacactaaattatataattttttcaaattattat 46644739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 4017807 - 4017847
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||||||||||||||| |||| |||||||||||||    
T  4017807 tatgattacactaaattatatcgttttctcaaattattatc 4017847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 15902885 - 15902829
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattattat 146  Q
    |||||||||| ||| ||||| ||||||||||||||| | ||||| ||||||||||||    
T  15902885 gacacaacaccgacacatataattacactaaattatgtgattttatcaaattattat 15902829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 155
Target Start/End: Original strand, 23128658 - 23128722
Alignment:
Q  91 acacaacactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcag 155  Q
    ||||||||| ||| |||||||||||||| ||||||||  |||| |||||||||||| | ||||||    
T  23128658 acacaacaccgacacatatgattacactgaattatatggttttctcaaattattattggtgtcag 23128722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 11831474 - 11831440
Alignment:
Q  111 attacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||||| |||||||||||||||||    
T  11831474 attacactaaattatatgattttttcaaattatta 11831440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 13427622 - 13427585
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattatt 144  Q
    |||||||| |||||||||| ||||||||||||||||||    
T  13427622 tatgattatactaaattatgtcattttttcaaattatt 13427585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 38134417 - 38134466
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattattatcgatgtca 154  Q
    |||||||||||| | |||||| ||||||| |||||||||||||| |||||    
T  38134417 catatgattacattgaattatgtcattttctcaaattattatcggtgtca 38134466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 46550792 - 46550836
Alignment:
Q  95 aacactgactcatatgattacactaaattatatcattttttcaaa 139  Q
    ||||||||| ||| |||||||||| |||||| |||||||||||||    
T  46550792 aacactgacacatgtgattacactcaattatgtcattttttcaaa 46550836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 6389789 - 6389749
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  6389789 tatgattacactaaattatatcattttctcaaattattatc 6389749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 10842580 - 10842540
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||||||||| | |||||||||||||||||    
T  10842580 catatgattacactaaattatgtgattttttcaaattatta 10842540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 17168480 - 17168516
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||||||||| |||||||||||||    
T  17168480 attacactaaattatatcattttctcaaattattatc 17168516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 19602194 - 19602234
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||||| |||||||||||||| |||||||||||||    
T  19602194 tatgattacactgaattatatcattttctcaaattattatc 19602234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 28862184 - 28862121
Alignment:
Q  91 acacaacactgactcatatgattacactaaatta-tatcattttttcaaattattatcgatgtc 153  Q
    |||| |||| ||| |||||||||||||| ||||| | ||||||| |||||||||||||||||||    
T  28862184 acacgacaccgacacatatgattacactgaattaatgtcattttatcaaattattatcgatgtc 28862121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 7938158 - 7938124
Alignment:
Q  111 attacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||||| |||||||||||||||||    
T  7938158 attacactaaattatatgattttttcaaattatta 7938124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 9195751 - 9195805
Alignment:
Q  91 acacaacactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    |||| |||| ||| ||||| ||||||||||||||| ||||||| |||||||||||    
T  9195751 acacgacaccgacacatataattacactaaattatgtcattttctcaaattatta 9195805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 84 - 145
Target Start/End: Complemental strand, 7086864 - 7086803
Alignment:
Q  84 gtgtttgacacaacactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    |||| |||||| |||| ||| ||||| ||||||||||||||| | ||||| |||||||||||    
T  7086864 gtgtctgacactacaccgacacatataattacactaaattatgtgattttctcaaattatta 7086803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 143
Target Start/End: Original strand, 9024172 - 9024225
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattat 143  Q
    ||||| |||||||| |||||||||||| | |||||| ||||||| |||||||||    
T  9024172 gacacgacactgacacatatgattacattgaattatgtcattttctcaaattat 9024225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 94 - 143
Target Start/End: Original strand, 13364705 - 13364754
Alignment:
Q  94 caacactgactcatatgattacactaaattatatcattttttcaaattat 143  Q
    |||||| ||| |||||||||||||| |||||||| ||||| |||||||||    
T  13364705 caacaccgacacatatgattacactgaattatatgattttctcaaattat 13364754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 148
Target Start/End: Original strand, 18252768 - 18252805
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatcg 148  Q
    ||||||||||||||| ||||||||| ||||||||||||    
T  18252768 attacactaaattatgtcatttttttaaattattatcg 18252805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 26178683 - 26178732
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattatta 145  Q
    |||| ||| ||||||||||||||||||||| | ||||| |||||||||||    
T  26178683 acaccgacacatatgattacactaaattatgtgattttatcaaattatta 26178732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Complemental strand, 7625164 - 7625128
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatc 147  Q
    |||| |||||||||||||||||| |||||||||||||    
T  7625164 attatactaaattatatcattttctcaaattattatc 7625128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 34446611 - 34446571
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||||| |||||| ||||||| |||||||||||||    
T  34446611 tatgattacactgaattatgtcattttctcaaattattatc 34446571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 105 - 153
Target Start/End: Original strand, 2577191 - 2577239
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||||    
T  2577191 catatgattacactaaattatgtcattttctcaaattattatcggtgtc 2577239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 4344787 - 4344740
Alignment:
Q  108 atgattacactaaattatatcattttttcaaattattatcgatgtcag 155  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||    
T  4344787 atgattacactgaattatgtcattttttcaaattattatcggtgtcag 4344740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 158
Target Start/End: Original strand, 39696012 - 39696063
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatcgatgtcagtgt 158  Q
    ||||||||||||||||||||||||||| |||||||||| ||| |||| ||||    
T  39696012 tatgattacactaaattatatcattttctcaaattattgtcggtgtcggtgt 39696063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 43554567 - 43554528
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattat 146  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  43554567 tatgattacactaaattatatcattttctcaaattattat 43554528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 12927711 - 12927649
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcagtgt 158  Q
    ||||||||  |||| ||||||||||||||||| ||||| ||||||||||| ||||||| ||||    
T  12927711 acactgacatatataattacactaaattatatgattttctcaaattattagcgatgtcggtgt 12927649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 16881184 - 16881143
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattattat 146  Q
    |||||||||||| |||||||| ||||||||||||||||||||    
T  16881184 catatgattacattaaattatgtcattttttcaaattattat 16881143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 155
Target Start/End: Original strand, 32630737 - 32630796
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcag 155  Q
    |||||||| ||||| |||||| | |||||||| ||||| |||||||||||||| ||||||    
T  32630737 acactgacacatataattacattgaattatataattttctcaaattattatcggtgtcag 32630796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 153
Target Start/End: Original strand, 38749559 - 38749622
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    ||||||||||  || ||||| |||||| | |||||| |||||||||||||||||||||| ||||    
T  38749559 gacacaacaccaacacatataattacattgaattatgtcattttttcaaattattatcggtgtc 38749622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 24906318 - 24906354
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatc 147  Q
    |||||||| |||||| |||||||||||||||||||||    
T  24906318 attacactgaattatgtcattttttcaaattattatc 24906354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 42469267 - 42469227
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||| ||| ||||||| |||||||||||||    
T  42469267 tatgattacactaaaatatgtcattttctcaaattattatc 42469227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 148
Target Start/End: Original strand, 43208264 - 43208328
Alignment:
Q  84 gtgtttgacacaacactgactcatatgattacactaaattatatcattttttcaaattattatcg 148  Q
    |||| ||||||||||| |||  ||||||||||| | |||||| ||||||| |||||||| |||||    
T  43208264 gtgtctgacacaacacagacagatatgattacattgaattatgtcattttctcaaattactatcg 43208328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 23354665 - 23354705
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||||||||||||||| |||||||||||||    
T  23354665 tatgattacactaaattatatcattttctcaaattattatc 23354705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 24011082 - 24011036
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  24011082 tatgattacactaaattatgtcattttctcaaattattatcaatgtc 24011036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 18571029 - 18570977
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaattattatcg 148  Q
    |||||||| |||||||||||| | |||||| ||||||| ||||||||||||||    
T  18571029 acactgacacatatgattacattgaattatgtcattttctcaaattattatcg 18570977  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 23355008 - 23355048
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||| ||||||||||||||||||| |||||||||||||    
T  23355008 tatgattgcactaaattatatcattttctcaaattattatc 23355048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 37986825 - 37986785
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||||| || |||||||||||||||||||||||||    
T  37986825 tatgattacactcaaatatatcattttttcaaattattatc 37986785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 25544527 - 25544488
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattat 146  Q
    |||||||||||| |||||||||||||| ||||||||||||    
T  25544527 tatgattacactgaattatatcattttctcaaattattat 25544488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 153
Target Start/End: Original strand, 10535772 - 10535818
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    |||||||||||| |||||| ||||||| |||||||||||||| ||||    
T  10535772 tatgattacactgaattatgtcattttctcaaattattatcggtgtc 10535818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Original strand, 20539691 - 20539725
Alignment:
Q  111 attacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||||| |||||||||||||||||    
T  20539691 attacactaaattatatgattttttcaaattatta 20539725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 145
Target Start/End: Complemental strand, 30335459 - 30335425
Alignment:
Q  111 attacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||| |||||||||||||||||||    
T  30335459 attacactaaattatgtcattttttcaaattatta 30335425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 141
Target Start/End: Complemental strand, 2423926 - 2423881
Alignment:
Q  96 acactgactcatatgattacactaaattatatcattttttcaaatt 141  Q
    |||||||||||||| |||| |||||||||||| ||||| |||||||    
T  2423926 acactgactcatataattatactaaattatatgattttctcaaatt 2423881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 143
Target Start/End: Original strand, 11308017 - 11308053
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattat 143  Q
    |||||||||||| |||||| |||||||||||||||||    
T  11308017 tatgattacactgaattatgtcattttttcaaattat 11308053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 12748730 - 12748682
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatcgatgtcag 155  Q
    |||||||||||| || ||| ||||||| ||||||||||||| |||||||    
T  12748730 tatgattacactgaactatgtcattttctcaaattattatccatgtcag 12748682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 30527606 - 30527646
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattatta 145  Q
    ||||| ||||||||||||||||| ||||| |||||||||||    
T  30527606 catataattacactaaattatatgattttctcaaattatta 30527646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 36281733 - 36281693
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattatta 145  Q
    ||||||||||||||||||||| | ||||| |||||||||||    
T  36281733 catatgattacactaaattatgtgattttctcaaattatta 36281693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 38919252 - 38919212
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||| |||| |||||| |||||||||||||    
T  38919252 tatgattacactaaactataacattttctcaaattattatc 38919212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 39820475 - 39820436
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattat 146  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  39820475 tatgattacactaaattatatcattttctcaaattattat 39820436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 12559117 - 12559157
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattatta 145  Q
    |||||||||||||| |||||||||||||| |||||||||||    
T  12559117 catatgattacactgaattatatcattttctcaaattatta 12559157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 146
Target Start/End: Complemental strand, 13845280 - 13845241
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattat 146  Q
    ||||||||| ||||||||||||||||| ||||||||||||    
T  13845280 tatgattactctaaattatatcattttctcaaattattat 13845241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 111 - 153
Target Start/End: Complemental strand, 20873111 - 20873069
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    ||||||||||||||| | ||||||||||||||||||| |||||    
T  20873111 attacactaaattatgtgattttttcaaattattatctatgtc 20873069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 152
Target Start/End: Complemental strand, 8017532 - 8017487
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatcgatgt 152  Q
    |||||||||||| |||||| ||||||||||| ||||||||| ||||    
T  8017532 tatgattacactcaattatgtcattttttcatattattatctatgt 8017487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 153
Target Start/End: Complemental strand, 9936862 - 9936814
Alignment:
Q  105 catatgattacactaaattatatcattttttcaaattattatcgatgtc 153  Q
    |||||||||| | | |||||||||||||| | |||||||||||||||||    
T  9936862 catatgattatattgaattatatcattttcttaaattattatcgatgtc 9936814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 13009506 - 13009546
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    |||||||||||||||||||||  |||| |||||||||||||    
T  13009506 tatgattacactaaattatattgttttctcaaattattatc 13009546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 35431153 - 35431193
Alignment:
Q  107 tatgattacactaaattatatcattttttcaaattattatc 147  Q
    ||||||||||||||| ||| ||||||| |||||||||||||    
T  35431153 tatgattacactaaaatatgtcattttctcaaattattatc 35431193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 90 - 143
Target Start/End: Complemental strand, 56985 - 56932
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattat 143  Q
    ||||| |||||||| | |||||||||||| |||||||||||||| |||||||||    
T  56985 gacacgacactgacacttatgattacactgaattatatcattttctcaaattat 56932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 152
Target Start/End: Complemental strand, 102947 - 102906
Alignment:
Q  111 attacactaaattatatcattttttcaaattattatcgatgt 152  Q
    |||||| | |||||||||||||| ||||||||||||||||||    
T  102947 attacattgaattatatcattttctcaaattattatcgatgt 102906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1528 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1528
Description:

Target: scaffold1528; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 90 - 158
Target Start/End: Complemental strand, 1098 - 1030
Alignment:
Q  90 gacacaacactgactcatatgattacactaaattatatcattttttcaaattattatcgatgtcagtgt 158  Q
    ||||| |||||||| |||||  ||||||| |||||| | ||||||||||||||||| || |||| ||||    
T  1098 gacaccacactgacacatatagttacactgaattatgtaattttttcaaattattagcggtgtcggtgt 1030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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