View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19365_low_4 (Length: 419)
Name: NF19365_low_4
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19365_low_4 |
 | |
|
| [»] chr4 (16 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 397; Significance: 0; HSPs: 16)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Original strand, 5603437 - 5603841
Alignment:
| Q |
15 |
acatatcatcacgaaaagtaaacacaaagaacaacataaatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcac |
114 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5603437 |
acatatcatcacgagaagtaaacacaaagaacaacataaatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcac |
5603536 |
T |
|
| Q |
115 |
caccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatact |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5603537 |
caccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatact |
5603636 |
T |
|
| Q |
215 |
ttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaaca |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5603637 |
ttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaaca |
5603736 |
T |
|
| Q |
315 |
agctagccttctacatgcaagctgtggatgcatctcctgccttttatcattttgttttttagtccaaggaggaccatatagcccatcgtttccttcaaat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5603737 |
agctagccttctacatgcaagctgtggatgcatctcctgccttttatcatttggttttttagtccaaggaggaccatatagcccatcgtttccttcaaat |
5603836 |
T |
|
| Q |
415 |
gatga |
419 |
Q |
| |
|
||||| |
|
|
| T |
5603837 |
gatga |
5603841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 109 - 416
Target Start/End: Original strand, 5557048 - 5557355
Alignment:
| Q |
109 |
tatcaccaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttcc |
208 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||| || || |||||||| | |||||||||||| || |||||||||||| ||||||||||||||||| |
|
|
| T |
5557048 |
tatcacaaccttaaaactgtgtatgtttgtcctctatcagtaacatattcaagatacatccttgaaaagatccagcaaagaattttgtccacaagtttca |
5557147 |
T |
|
| Q |
209 |
aatactttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaat |
308 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| |||||| ||||||| ||||| | ||||| | ||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
5557148 |
aataatttaccctccattgcttccaaaacattatgggacaaatgactattccgaatccaaacacaaatcccagttctacacttataaaattccagtcaat |
5557247 |
T |
|
| Q |
309 |
tgaacaagctagccttctacatgcaagctgtggatgcatctcctgccttttatcattttgttttttagtccaaggaggaccatatagcccatcgtttcct |
408 |
Q |
| |
|
|||||||| ||||||| |||||| | |||||||||| || ||||||||| ||| | || || ||| | |||||||||||||| ||||| || ||| |
|
|
| T |
5557248 |
tgaacaagtaagccttccacatgctggttgtggatgcaagtcatgccttttaccatctagtcttaccgtcaatggaggaccatatagtccatcattacct |
5557347 |
T |
|
| Q |
409 |
tcaaatga |
416 |
Q |
| |
|
|||||||| |
|
|
| T |
5557348 |
tcaaatga |
5557355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 409
Target Start/End: Original strand, 5856182 - 5856484
Alignment:
| Q |
113 |
accaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaata |
212 |
Q |
| |
|
|||||||||||||| |||| ||||| |||| | |||||||||| | || ||||| | ||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
5856182 |
accaccttaaaactgtgtaagtttgtcctccttgttttacatattcaaaatgcatccaagggaatatccagcaaagaattttgtccatgagtttccaata |
5856281 |
T |
|
| Q |
213 |
ctttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaa |
312 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||| ||| |||||||||||||||| ||||| | ||||||||||| ||||||||| |||||| || |
|
|
| T |
5856282 |
acctaccctccattgcttccaaaacatgatgggaccaataacacttccaagcccaaaaataaatcctagttccacacttaaaaaattccaatcaattaaa |
5856381 |
T |
|
| Q |
313 |
caagctagc------cttctacatgcaagctgtggatgcatctcctgccttttatcattttgttttttagtccaaggaggaccatatagcccatcgtttc |
406 |
Q |
| |
|
|||| || | ||||||||||| |||||||||||| |||||| ||||||||| | |||| ||||| | |||| ||||||| || ||||||| |
|
|
| T |
5856382 |
caagataactttctacttctacatgctggctgtggatgcaattcctgctttttatcatatgcttttctagtcaacagaggtccatataatccgtcgtttc |
5856481 |
T |
|
| Q |
407 |
ctt |
409 |
Q |
| |
|
||| |
|
|
| T |
5856482 |
ctt |
5856484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 99 - 317
Target Start/End: Original strand, 5562823 - 5563041
Alignment:
| Q |
99 |
gcactaatgttatcaccaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtcc |
198 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||| || ||||| || ||| ||||||| | || |||||| ||||||| | || ||| ||||||| |
|
|
| T |
5562823 |
gcactaatgttatcaccaccttaaaattctgtatgtctgtcctctatcagttgcatattcaaaatgcatcctctggaaaatcaaacagagaattttgtct |
5562922 |
T |
|
| Q |
199 |
acaagtttccaatactttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaat |
298 |
Q |
| |
|
|| ||||||||||| |||| ||||| | ||||||||||| || |||| || || ||||| |||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
5562923 |
acgagtttccaataacttactctccatttcttccaaaacaagaggggaccaacgatgattccgagcccaaaaacaaatcccaattccacacttaaaaaat |
5563022 |
T |
|
| Q |
299 |
tccagtcaattgaacaagc |
317 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5563023 |
tccagtcaattgaacaagc |
5563041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 114 - 321
Target Start/End: Complemental strand, 5573271 - 5573064
Alignment:
| Q |
114 |
ccaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatac |
213 |
Q |
| |
|
||||||||||||||||||||| || ||||| | |||||||||||| | || |||||||| || |||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
5573271 |
ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat |
5573172 |
T |
|
| Q |
214 |
tttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaac |
313 |
Q |
| |
|
||| |||||| |||||||||||||| | ||| |||||||||||| || ||||||| || |||||||| ||||||| ||| |||||||| |||||| |
|
|
| T |
5573171 |
cttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttccagtctgttgaac |
5573072 |
T |
|
| Q |
314 |
aagctagc |
321 |
Q |
| |
|
||| |||| |
|
|
| T |
5573071 |
aagatagc |
5573064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 114 - 321
Target Start/End: Complemental strand, 5585478 - 5585271
Alignment:
| Q |
114 |
ccaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatac |
213 |
Q |
| |
|
||||||||||||||||||||| || ||||| | |||||||||||| | || |||||||| || |||||||||||| |||| ||||| ||||||||||| |
|
|
| T |
5585478 |
ccaccttaaaactatgtatgtctgtcctctatgggttacatattcaagatgaatccttgaaaagatccagcaaagaattttatccactagtttccaatat |
5585379 |
T |
|
| Q |
214 |
tttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaac |
313 |
Q |
| |
|
||| |||||| |||||||||||||| | ||| |||||||||||| || ||||||| || |||||||| ||||||| ||| |||||||| |||||| |
|
|
| T |
5585378 |
cttatcctccattgcttccaaaacattagaggaccaatgacaattccgagaccaaaaacaaaccccaattctacacttaaaaatttccagtctgttgaac |
5585279 |
T |
|
| Q |
314 |
aagctagc |
321 |
Q |
| |
|
||| |||| |
|
|
| T |
5585278 |
aagatagc |
5585271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 103 - 324
Target Start/End: Original strand, 5551274 - 5551495
Alignment:
| Q |
103 |
taatgttatcaccaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaa |
202 |
Q |
| |
|
||||||||||||||||||||| | ||||||| || | ||| || ||| ||||||| | |||||||||| ||| |||| || ||| ||||||| | | |
|
|
| T |
5551274 |
taatgttatcaccaccttaaagttctgtatgtctgtcatctatcagttgcatattcaaaatacatcctttggaagatccgacagagaattttgtctgcga |
5551373 |
T |
|
| Q |
203 |
gtttccaatactttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattcca |
302 |
Q |
| |
|
|||||||||| |||| ||||| | ||||||||||| || |||| | |||| |||||||||||||||| |||||||| |||||||||| ||||||||| |
|
|
| T |
5551374 |
gtttccaatagcttactctccatttcttccaaaacaagaggggacagatgatgattccaagcccaaaaacaaatcccaactccacacttaaaaaattcca |
5551473 |
T |
|
| Q |
303 |
gtcaattgaacaagctagcctt |
324 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
5551474 |
gtcaattgaacaagctaacctt |
5551495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 31 - 315
Target Start/End: Complemental strand, 5850218 - 5849936
Alignment:
| Q |
31 |
agtaaacacaaagaacaacataaatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcaccaccttaaaactatgt |
130 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| ||||||||| | |||| | |||||||||| | || ||||||| |||||||||||||||| | ||| |
|
|
| T |
5850218 |
agtaaacacaaaatacaacttaaatgaaaatagaaaacatcgatttaatatttatcacaatccgtagc--actaatgctatcaccaccttaaaattctgt |
5850121 |
T |
|
| Q |
131 |
atgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgctt |
230 |
Q |
| |
|
|||| || ||||| || ||| ||||||| | |||||| ||| ||| ||||| || ||| ||||||| || ||||||||||| |||| ||||| | ||| |
|
|
| T |
5850120 |
atgtctgtcctctatcagttgcatattcaaaatacattcttcggaagatccaacatagaattttgtctacgagtttccaataacttactctccatttctt |
5850021 |
T |
|
| Q |
231 |
ccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaa |
315 |
Q |
| |
|
|||||||| || |||| |||| |||||| |||||||||| |||||||| |||||||||| ||||||||||||||| |||||| |
|
|
| T |
5850020 |
ccaaaacaagaggggagtgatgataattccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaatcgaacaa |
5849936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 109 - 317
Target Start/End: Complemental strand, 5888353 - 5888145
Alignment:
| Q |
109 |
tatcaccaccttaaaactatgtatgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttcc |
208 |
Q |
| |
|
|||||||||||||||| | ||||||| || ||||| || ||||||||||| | || |||||| ||||||| | || ||| ||||||| || ||||||| |
|
|
| T |
5888353 |
tatcaccaccttaaaattctgtatgtctgtcctctatcagttacatattcaaaatgcatcctccggaaaatcaaacatagaattttgtctacgagtttcc |
5888254 |
T |
|
| Q |
209 |
aatactttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaat |
308 |
Q |
| |
|
|||| |||| ||||| | ||||||||||| || |||| || || |||||||| |||||||| ||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
5888253 |
aataacttactctccatttcttccaaaacaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccattcaat |
5888154 |
T |
|
| Q |
309 |
tgaacaagc |
317 |
Q |
| |
|
||||||||| |
|
|
| T |
5888153 |
tgaacaagc |
5888145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 36 - 317
Target Start/End: Complemental strand, 5897287 - 5897008
Alignment:
| Q |
36 |
acacaaagaacaacataaatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcaccaccttaaaactatgtatgtt |
135 |
Q |
| |
|
|||||||| ||||| ||||| |||| | |||||||| ||||| | |||||||||| || || | |||| |||||||||||||||| | ||||||| |
|
|
| T |
5897287 |
acacaaagtacaacttaaatataaatacaaaacattattttaatagttatcacaatccctagc--attaattctatcaccaccttaaaattctgtatgtc |
5897190 |
T |
|
| Q |
136 |
tgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgcttccaaa |
235 |
Q |
| |
|
|| ||||| || ||||||||||| | || |||||| ||||||| | || ||| ||||||| || ||||||||||| |||| ||||| | |||||||| |
|
|
| T |
5897189 |
tgtcctctatcagttacatattcaaaatgcatcctccggaaaatcaaacatagaattttgtctacgagtttccaataacttactctccatttcttccaaa |
5897090 |
T |
|
| Q |
236 |
acatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagc |
317 |
Q |
| |
|
||| || |||| || || |||||||| |||||||| ||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
5897089 |
acaagaggggaccaacgatgattccaagtccaaaaataaatcccaattccacacttaaaaaattccgttcaattgaacaagc |
5897008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 34 - 312
Target Start/End: Original strand, 5611576 - 5611852
Alignment:
| Q |
34 |
aaacacaaagaacaacataaatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcaccaccttaaaactatgtatg |
133 |
Q |
| |
|
|||||||||| |||||| ||||| ||| ||||||||| ||| | |||||||||||| || |||||||| |||| |||||||||||| | |||||| |
|
|
| T |
5611576 |
aaacacaaagtacaacaaaaatggaaattgaaaacattatttaaataattatcacaat--ctctagcactaatcttatgaccaccttaaaattgtgtatg |
5611673 |
T |
|
| Q |
134 |
tttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgcttcca |
233 |
Q |
| |
|
| || ||||| || ||||||||||| | || |||||| |||||| | || ||| ||||||| || ||||||||||| |||| ||||| | |||||| |
|
|
| T |
5611674 |
tctgtcctctatcagttacatattcaaaatgcatcctccgaaaaatcaaacagagaattttgtctacgagtttccaataacttactctccatttcttcca |
5611773 |
T |
|
| Q |
234 |
aaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaa |
312 |
Q |
| |
|
||||| | ||| |||| ||||| |||||||||| |||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
5611774 |
aaacaaaagaggaccgatgatgattccgagcccaaaaacaaatcccaactccacacttaaaaaattccagtcaattgaa |
5611852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 324
Target Start/End: Complemental strand, 5855193 - 5854903
Alignment:
| Q |
31 |
agtaaacacaaagaacaacataaatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcaccaccttaaaactatgt |
130 |
Q |
| |
|
||||||||||||| ||||| ||||| || | | |||||||| ||||| | |||||||||| || || ||| |||||||||| |||||||| | ||| |
|
|
| T |
5855193 |
agtaaacacaaagtacaacttaaatttacatacaaaacattattttaatagttatcacaatccctagc--actgatgttatcacacccttaaaattctgt |
5855096 |
T |
|
| Q |
131 |
atgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgctt |
230 |
Q |
| |
|
|||| || ||||| || ||| ||||||| | |||||||||| ||| ||||| || | | |||| || || |||||||||| ||| ||||| |||| |
|
|
| T |
5855095 |
atgtctgtcctctatcagttgcatattcaaaatacatccttcggaagatccaacagataatttt-tctacgcgtttccaataacatactctccatcgctt |
5854997 |
T |
|
| Q |
231 |
ccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagcctt |
324 |
Q |
| |
|
|||||||| | ||||| ||||| ||||| |||||||||| |||||||| |||| ||| | |||||||||||||||||||||||||| |||| |
|
|
| T |
5854996 |
ccaaaacaaggtgggaccaatgatgattccgagcccaaaaacaaatcccaactccatactcaaaaaattccagtcaattgaacaagctaacctt |
5854903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 31 - 324
Target Start/End: Complemental strand, 5891439 - 5891149
Alignment:
| Q |
31 |
agtaaacacaaagaacaacataaatgtaaacagaaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcaccaccttaaaactatgt |
130 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| ||||||||| | |||| | |||||||||| | | ||||||||| |||||||||||||||| | ||| |
|
|
| T |
5891439 |
agtaaacacaaaatacaacttaaatgaaaatagaaaacatcgatttaatatttatcacaat--ccttagcactaatgctatcaccaccttaaaattttgt |
5891342 |
T |
|
| Q |
131 |
atgtttgacctctgtcggttacatattccatatacatccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgctt |
230 |
Q |
| |
|
|||| | ||||| || |||||||||| | || |||||| ||||||| | || ||| | ||||| || ||||||||||| |||| ||||| | ||| |
|
|
| T |
5891341 |
atgtctttcctctatcaattacatattcaaaatgcatcctccggaaaatcaaacagagaatcttgtctacgagtttccaataacttactctccatttctt |
5891242 |
T |
|
| Q |
231 |
ccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagcctt |
324 |
Q |
| |
|
||||| || || |||| ||||| ||||| | |||||||| |||||||| |||||||||| ||||||||| |||||||||||| ||| |||| |
|
|
| T |
5891241 |
ccaaa-caagaggggaccaatgatgattccgaacccaaaaacaaatcccaactccacacttaaaaaattccaatcaattgaacaacctaacctt |
5891149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 194 - 410
Target Start/End: Original strand, 3747115 - 3747331
Alignment:
| Q |
194 |
tgtccacaagtttccaatactttaccctccaatgcttccaaaacatgatgggataaatgacaattccaagcccaaaaatgaatcccaattccacacttat |
293 |
Q |
| |
|
|||||| |||||| ||||| | | ||||||| ||||||||||||||| |||| || | ||| |||||||| |||| ||||| ||||||||||||| |
|
|
| T |
3747115 |
tgtccaaaagtttgcaatagtcttccctccatcgcttccaaaacatgaagggaattatcaaaatcccaagcccgaaaacaaatccaaattccacacttaa |
3747214 |
T |
|
| Q |
294 |
aaaattccagtcaattgaacaagctagccttctacatgcaagctgtggatgcatctcctgccttttatcattttgttttttagtccaaggaggaccatat |
393 |
Q |
| |
|
|| |||||||||| |||| ||||||||||| ||||| |||||||||| ||||||||| || ||| | |||||| |||| | |||||||||||| |
|
|
| T |
3747215 |
aatattccagtcacttgacttagctagccttccacatgtttcttgtggatgcaagtcctgccttataccatctggtttttcagtcaacggaggaccatat |
3747314 |
T |
|
| Q |
394 |
agcccatcgtttccttc |
410 |
Q |
| |
|
|| |||| |||||||| |
|
|
| T |
3747315 |
agaccataatttccttc |
3747331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 253747 - 253680
Alignment:
| Q |
249 |
aatgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaag |
316 |
Q |
| |
|
||||| ||||||||||||||||| ||||| | ||||| ||||| ||||||||| ||||||||||||| |
|
|
| T |
253747 |
aatgaaaattccaagcccaaaaacaaatccaagttccatacttaaaaaattccaatcaattgaacaag |
253680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 5363780 - 5363717
Alignment:
| Q |
250 |
atgacaattccaagcccaaaaatgaatcccaattccacacttataaaattccagtcaattgaac |
313 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||| |||||||||| ||| ||||||||||||||| |
|
|
| T |
5363780 |
atgaaaattccaaacccaaaaataaatcccaactccacacttaagaaactccagtcaattgaac |
5363717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 8e-65; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 64 - 416
Target Start/End: Original strand, 1481230 - 1481580
Alignment:
| Q |
64 |
aaaacattgttttacaaattatcacaatgacttgcgcactaatgttatcaccaccttaaaactatgtatgtttgacctctgtcggttacatattccatat |
163 |
Q |
| |
|
|||||||| | |||| |||||| ||||||||| || ||||||| |||| ||||||||||||| |||||||||| ||||| || ||| ||||||| | || |
|
|
| T |
1481230 |
aaaacattatcttactaattattacaatgactagc--actaatggtatcgccaccttaaaactgtgtatgtttgtcctctatcagttgcatattcaagat |
1481327 |
T |
|
| Q |
164 |
acatccttgagaaaatccagcaaagagttttgtccacaagtttccaatactttaccctccaatgcttccaaaacatgatgggataaatgacaattccaag |
263 |
Q |
| |
|
||||||||| || |||||||||||| |||||||||||| || ||||||| |||||||||| ||||||||| ||||||| ||| |||| ||||| || |
|
|
| T |
1481328 |
tcatccttgaaaagatccagcaaagaattttgtccacaacttgccaataccttaccctccattgcttccaagacatgataggaacgatgatgattcctag |
1481427 |
T |
|
| Q |
264 |
cccaaaaatgaatcccaattccacacttataaaattccagtcaattgaacaagctagccttctacatgcaagctgtggatgcatctcctgccttttatca |
363 |
Q |
| |
|
|| ||||| ||||| ||||||||||||| |||||||||||||| |||||||||||||| |||||||| | ||||||| || || ||||| ||| || |
|
|
| T |
1481428 |
tccgaaaataaatcctaattccacacttagaaaattccagtcaactgaacaagctagccctctacatgttggttgtggatccaagtcttgcctcttacca |
1481527 |
T |
|
| Q |
364 |
ttttgttttttagtccaaggaggaccatatagcccatcgtttccttcaaatga |
416 |
Q |
| |
|
| | |||||| |||| | ||||| |||||||||||||| |||||||||||||| |
|
|
| T |
1481528 |
tctggtttttcagtcaatggaggtccatatagcccatcatttccttcaaatga |
1481580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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