View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19365_low_5 (Length: 406)
Name: NF19365_low_5
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19365_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 13 - 383
Target Start/End: Original strand, 32256976 - 32257346
Alignment:
| Q |
13 |
aatatagaattcgaaagacctgatcaccttttatcttgtaattataaaccattttatttgcattttacatttaattgaatgtttttgagccaaatcaatt |
112 |
Q |
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| T |
32256976 |
aatataggattcgaaagacctggacaccttttatcttgtaattataaaccattttatttgcattttacatttaattgaatgtttttgagccaaatcaatt |
32257075 |
T |
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| Q |
113 |
tccatgttcaacctccctattttatacatatgatctgataatgtcattgctaagttgaaaacaaaacagtccctatggatatgaattatatttattactt |
212 |
Q |
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| T |
32257076 |
tccatgttcaacctccctattttatacatatgatctgataatgtcattgctaagttgaaaacaaaacagtccctatggatacgaattatatttattactt |
32257175 |
T |
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| Q |
213 |
tgacaatttttagtacaattgctaagattacatcatgatttaagtgaaaatgcatggaaattgaattaggaaggttttgtagtcacattacttttacatt |
312 |
Q |
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| T |
32257176 |
tgacagtttttagtacaattgctaagattacatcatgatttaagtgaaaatgcatggaaatcgaattaggaaggttttgtagtcacattacttttacatt |
32257275 |
T |
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| Q |
313 |
cgaaaaatagtatatataaagtccattgatgtttggaatgtgctaagaaatcaagttttcaagaaatgagg |
383 |
Q |
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| T |
32257276 |
cggaaaatagtatatataaagtccattgatgtttggaatgtgctaagaaatcaagttttcaagaaatgagg |
32257346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Original strand, 29157755 - 29157789
Alignment:
| Q |
332 |
agtccattgatgtttggaatgtgctaagaaatcaa |
366 |
Q |
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| T |
29157755 |
agtccattgatgcttggaatgtgctaagaaatcaa |
29157789 |
T |
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