View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19365_low_6 (Length: 388)
Name: NF19365_low_6
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19365_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 66 - 276
Target Start/End: Original strand, 1591072 - 1591282
Alignment:
| Q |
66 |
ccattgtttcttggcgaacatgatctcgttccattgtttcttggagaacacgttgatagagtttctttatttgtgctaactcttcttgagtataaaattg |
165 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1591072 |
ccattgtttcttggcaaacatgatctcgttccattgtttcttggagaacacgttgatagagtttctttatttctgctaactcttcttgagtataaaattg |
1591171 |
T |
|
| Q |
166 |
tggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcgctgttttcgctatttccatgtattctttgatcttctcctta |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1591172 |
tggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcgctgttttcgctatttccatgtattctttaatcttctcctta |
1591271 |
T |
|
| Q |
266 |
gtcatagcaaa |
276 |
Q |
| |
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||||||||||| |
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| T |
1591272 |
gtcatagcaaa |
1591282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1590977 - 1591085
Alignment:
| Q |
1 |
ataagacatgctgctaccttcatcacttgagcgacaccttttctttttattcacgacatccacttccattgtttcttggcgaacatgatctcgttccatt |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
1590977 |
ataaaacatgctgctaccttcatcacttgagcgacaccttttctttttattcacgacatctccttccattgtttcttggcgaacatgatctcgtgccatt |
1591076 |
T |
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| Q |
101 |
gtttcttgg |
109 |
Q |
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||||||||| |
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| T |
1591077 |
gtttcttgg |
1591085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1587246 - 1587135
Alignment:
| Q |
1 |
ataagacatgctgctaccttcatcacttgagcgacaccttttctttttattcacgacatccacttccattgtttcttggcgaacatgatctcgttccatt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||| ||| |||| ||||||| |
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| T |
1587246 |
ataagacatgctgctaccttcatcacttgagcgacaccttttctttttattcactatatcttcttccattatttcttggcaaac---atcttcttccatt |
1587150 |
T |
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| Q |
101 |
gtttcttggagaaca |
115 |
Q |
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|||||||||| |||| |
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| T |
1587149 |
gtttcttggacaaca |
1587135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 1586821 - 1586769
Alignment:
| Q |
63 |
cttccattgtttcttggcgaacatgatctcgttccattgtttcttggagaaca |
115 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||| |||| |
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| T |
1586821 |
cttccgttgtttcttggcgaacatgatctccttccattgtttcttggacaaca |
1586769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 1586851 - 1586799
Alignment:
| Q |
63 |
cttccattgtttcttggcgaacatgatctcgttccattgtttcttggagaaca |
115 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
1586851 |
cttccattgtttcttggcgaacatgatctccttccgttgtttcttggcgaaca |
1586799 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 1586965 - 1586913
Alignment:
| Q |
63 |
cttccattgtttcttggcgaacatgatctcgttccattgtttcttggagaaca |
115 |
Q |
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|
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||| |
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| T |
1586965 |
cttccattgtttcttggcgaacatgatctccttccgttgtttcttggtgaaca |
1586913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 1580735 - 1580693
Alignment:
| Q |
12 |
tgctaccttcatcacttgagcgacaccttttctttttattcac |
54 |
Q |
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| T |
1580735 |
tgctaccttcatcacttgagcgacaccttttcttcttattcac |
1580693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 12 - 54
Target Start/End: Original strand, 1604080 - 1604122
Alignment:
| Q |
12 |
tgctaccttcatcacttgagcgacaccttttctttttattcac |
54 |
Q |
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|
|||||||||||||||||||||||||||||||||| |||||||| |
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| T |
1604080 |
tgctaccttcatcacttgagcgacaccttttcttcttattcac |
1604122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 1586935 - 1586883
Alignment:
| Q |
63 |
cttccattgtttcttggcgaacatgatctcgttccattgtttcttggagaaca |
115 |
Q |
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|
||||| ||||||||||| |||||||||||| ||||||||||||||||| |||| |
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| T |
1586935 |
cttccgttgtttcttggtgaacatgatctccttccattgtttcttggaaaaca |
1586883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 115
Target Start/End: Complemental strand, 1587075 - 1587024
Alignment:
| Q |
64 |
ttccattgtttcttggcgaacatgatctcgttccattgtttcttggagaaca |
115 |
Q |
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||||||||||| ||||||||||||||||| ||| ||||||||||||| |||| |
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| T |
1587075 |
ttccattgttttttggcgaacatgatctccttctattgtttcttggacaaca |
1587024 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 149
Target Start/End: Complemental strand, 1586791 - 1586708
Alignment:
| Q |
63 |
cttccattgtttcttggcgaacatgatctcgttccattgtttcttggagaacacgttgatagagtttctttatttgtgctaactctt |
149 |
Q |
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|
||||||||||||||||| ||||| ||| |||||||||||||||| || | |||||| || ||||| ||||||||||||||||| |
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| T |
1586791 |
cttccattgtttcttggacaacat---ctccttccattgtttcttggcaaagatgttgattgattttctgtatttgtgctaactctt |
1586708 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 64 - 276
Target Start/End: Original strand, 19270865 - 19271077
Alignment:
| Q |
64 |
ttccattgtttcttggcgaacatgatctcgttccattgtttcttggagaacacgttgatagagtttctttatttgtgctaactcttcttgagtataaaat |
163 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19270865 |
ttccattgtttcttggcgaacatgatctcgttcctttgtttcttggagaacacgttgatagagtttctttatttgtgccaactcttcttgagtataaaat |
19270964 |
T |
|
| Q |
164 |
tgtggagcaagtgtagctatgacgcattgccaagtaaaattatggtaagggttgaatggcgctgttttcgctatttccatgtattctttgatcttctcct |
263 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
19270965 |
tggggagcaagtgtagctatgacgcattgccaagcaaaattatggtgagggttgaatggcgctgttttcgctatttccatgtattcgttgatcttctcct |
19271064 |
T |
|
| Q |
264 |
tagtcatagcaaa |
276 |
Q |
| |
|
||||||||||||| |
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|
| T |
19271065 |
tagtcatagcaaa |
19271077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 19270563 - 19270619
Alignment:
| Q |
4 |
agacatgctgctaccttcatcacttgagcgacaccttttctttttattcacgacatc |
60 |
Q |
| |
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||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
19270563 |
agacatgcttctaccttcatcacttgagcaacaccttttctttttattcactacatc |
19270619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 101 - 274
Target Start/End: Original strand, 39616357 - 39616530
Alignment:
| Q |
101 |
gtttcttggagaacacgttgatagagtttctttatttgtgctaactcttcttgagtataaaattgtggagcaagtgtagctatgacgcattgccaagtaa |
200 |
Q |
| |
|
||||||||||||||| ||||| | ||||||||||||||| ||||||||||| || |||||||||||||||| || ||||||| ||||||||||||| || |
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| T |
39616357 |
gtttcttggagaacaagttgactgtgtttctttatttgtgttaactcttcttcagaataaaattgtggagcacgtatagctatcacgcattgccaagcaa |
39616456 |
T |
|
| Q |
201 |
aattatggtaagggttgaatggcgctgttttcgctatttccatgtattctttgatcttctccttagtcatagca |
274 |
Q |
| |
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| |||||| || |||||| |||||| ||||| ||| ||||||||||| |||||||||||||| |||| |||||| |
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| T |
39616457 |
agttatgggaaaggttgagtggcgccgtttttgctttttccatgtatcctttgatcttctccctagtgatagca |
39616530 |
T |
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