View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19365_low_8 (Length: 291)
Name: NF19365_low_8
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19365_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 2309842 - 2310103
Alignment:
| Q |
15 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaa |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309842 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaa |
2309941 |
T |
|
| Q |
115 |
tactgttgtttcatatgcagatactcttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagttt |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2309942 |
tactgttgtttcatatgcagatactcttttagagttagagtagcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagttt |
2310041 |
T |
|
| Q |
215 |
ttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtggtgaa |
276 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
2310042 |
ttgaacggtgggacagacactacttccactagtttggagtggattatggcgaatgtggtgaa |
2310103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 2293511 - 2293772
Alignment:
| Q |
15 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2293511 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatattaa |
2293610 |
T |
|
| Q |
115 |
tactgttgtttcatatgcagatactcttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagttt |
214 |
Q |
| |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2293611 |
tactgttgtttcatatgcagatactctcttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagttt |
2293710 |
T |
|
| Q |
215 |
ttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtggtgaa |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
2293711 |
ttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtagtgaa |
2293772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 2320825 - 2321086
Alignment:
| Q |
15 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaa |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
2320825 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgataa |
2320924 |
T |
|
| Q |
115 |
tactgttgtttcatatgcagatactcttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagttt |
214 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||| |||| ||| ||||||||||| ||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
2320925 |
tacagttgtttcgtatgcagatactcttttagagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggttaatctttgttcggagttt |
2321024 |
T |
|
| Q |
215 |
ttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtggtgaa |
276 |
Q |
| |
|
|||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
2321025 |
ttgaacggtgggacggatactacttccactgctttgcagtggattatggcgaatttggtgaa |
2321086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 2303127 - 2303382
Alignment:
| Q |
18 |
aggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2303127 |
aggagtttttgaagttacttaaggatcaagaggatgttctacttccgctgataagagcgaggaaacaagttaaggagagtaaattgaacaatgttaatac |
2303226 |
T |
|
| Q |
118 |
tgttgtttcatatgcagatactcttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagtttttg |
217 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||| |||| ||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
2303227 |
tgttgtttcgtatgcagatactcttctagagttggagttgcccgaggagaaacgaaagttgagtgagaatgaaatggttaatctttgttcagagtttctg |
2303326 |
T |
|
| Q |
218 |
aacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtggt |
273 |
Q |
| |
|
|| |||||||| || ||||||||||||| |||||| ||||||||||||||| |||| |
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|
| T |
2303327 |
aatggtgggacggatactacttccactactttgcaatggattatggcgaatttggt |
2303382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 28 - 276
Target Start/End: Original strand, 2330407 - 2330655
Alignment:
| Q |
28 |
gaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttca |
127 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||| |||||||||||||||| |
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|
| T |
2330407 |
gaagttgcttaaagatcaagaagatgttctgcttccgctgataagagcgaggaagcatgttaaggagagtagattgaacaatattaatactgttgtttcg |
2330506 |
T |
|
| Q |
128 |
tatgcagatactcttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtggga |
227 |
Q |
| |
|
|||| |||||||||| | ||||| |||| |||| ||||||||||||| |||||||| |||||||| ||| ||||||||| ||||||||||||||||| | |
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|
| T |
2330507 |
tatgtagatactcttatggagttggagttgcctcaggagaaacggaaattgagtgaggatgaaatgattagtctttgttcggagtttttgaacggtggca |
2330606 |
T |
|
| Q |
228 |
cagacactacttccactagtttgcagtggattatggcgaatgtggtgaa |
276 |
Q |
| |
|
| || ||||||||||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
2330607 |
cggatactacttccaccgctttgcaatggattatggcgaatttggtgaa |
2330655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 276
Target Start/End: Original strand, 2350700 - 2350961
Alignment:
| Q |
15 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaa |
114 |
Q |
| |
|
|||| ||||| |||||||||| ||||||||||| |||||| ||||||||||||| ||||| |||||||||||||| ||||||| ||||||||||||||| |
|
|
| T |
2350700 |
gggaagagttgttgaagttacgaaaggatcaagaagatgttttgcttccgctgattagagcgaggaagcaagttaaagagagtagattgaacaatgttaa |
2350799 |
T |
|
| Q |
115 |
tactgttgtttcatatgcagatactcttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagttt |
214 |
Q |
| |
|
|||| ||||| |||| ||||||||||| ||||| |||| |||||| ||||||||||| ||||||| |||||||||||| |||||||||||||||| |
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|
| T |
2350800 |
ccctgtagtttcgtatgtggatactcttttggagttggagttgcctgatgagaaacggaaattgagtgaagatgaaatggttagtctttgttcagagttt |
2350899 |
T |
|
| Q |
215 |
ttgaacggtgggacagacactacttccactagtttgcagtggattatggcgaatgtggtgaa |
276 |
Q |
| |
|
||||| | ||||| ||| ||||||||||| |||||| ||||||||||| ||| ||||||| |
|
|
| T |
2350900 |
ttgaatgctgggatagatactacttccacggctttgcaatggattatggcaaatttggtgaa |
2350961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 41 - 276
Target Start/End: Original strand, 2326705 - 2326940
Alignment:
| Q |
41 |
gatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaatactgttgtttcatatgcagatactc |
140 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||| || | ||||| | |
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|
| T |
2326705 |
gatcaagaagatgttttgcttccgctgataagagggaggaagcaagttaaggagactaaattgaacaatgctaatactgttgtttcctacgtggatacac |
2326804 |
T |
|
| Q |
141 |
ttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagtttttgaacggtgggacagacactacttc |
240 |
Q |
| |
|
|||| ||||| |||| ||| ||| ||||||||| ||| |||| |||||||||||| ||||||||| ||||||||||| | ||| ||||| |||||||| |
|
|
| T |
2326805 |
ttttggagttggagttgccaatggaaaaacggaagttgactgaggatgaaatggttagtctttgttcggagtttttgaatgctggtacagatactacttc |
2326904 |
T |
|
| Q |
241 |
cactagtttgcagtggattatggcgaatgtggtgaa |
276 |
Q |
| |
|
||| |||||| ||||||||||||||| ||||||| |
|
|
| T |
2326905 |
caccgctttgcattggattatggcgaatttggtgaa |
2326940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 41126706 - 41126931
Alignment:
| Q |
15 |
gggaggagtttttgaagttacttaaggatcaagaggatgttctgcttccgctgataagagcaaggaagcaagttaaggagagtaaattgaacaatgttaa |
114 |
Q |
| |
|
||||||| || |||||||| | || |||||||| |||||||| |||||||| |||||||| |||||| ||| ||||| || | ||||| ||| || |
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|
| T |
41126706 |
gggaggaattgttgaagttgcgaaaagatcaagaagatgttctacttccgctaataagagcgaggaaggaagccaaggaaaggagattgagcaaa---aa |
41126802 |
T |
|
| Q |
115 |
tactgttgtttcatatgcagatactcttttagagttagagtggcctgaggagaaacggaagctgagtgagaatgaaatggttaatctttgttcagagttt |
214 |
Q |
| |
|
| ||||||||| ||||||||||||||||| || || |||| ||| ||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |
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|
| T |
41126803 |
caatgttgtttcctatgcagatactcttttggaattggagttgcccgaggagaaacgcaagctgagtgaagatgaaatggtcagcctttgttcagagttt |
41126902 |
T |
|
| Q |
215 |
ttgaacggtgggacagacactacttccac |
243 |
Q |
| |
|
||||| | ||| |||||||| || ||||| |
|
|
| T |
41126903 |
ttgaatgctggcacagacacgacctccac |
41126931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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