View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19365_low_9 (Length: 237)
Name: NF19365_low_9
Description: NF19365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19365_low_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 31 - 237
Target Start/End: Complemental strand, 19052894 - 19052688
Alignment:
| Q |
31 |
caaaatcatttagagtgttataatatgtcatttgatatctggaaaaatttagtcaaaatacaagagtaaaacaaatacttgtcttattacaaaccaagtt |
130 |
Q |
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| T |
19052894 |
caaaatcatttagagtgttataatatgtcacttgatatctggaaaaatttagtcaaaatacaagagtaaaacaaatacttgtcttattacaaaccaagtt |
19052795 |
T |
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| Q |
131 |
cttcgaggctaaaaagttaccgtacaaccaagcaacctctcgagacaggtagcttctgtttatttgaaacttagtgagctctgaaactaatccattcgac |
230 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19052794 |
cttcgaggctaaaatgttaccgtacaaccaagcaacctctcgagacaggtagcttctgtttatttgaaacttagtgagctctgaaactaatccattcgac |
19052695 |
T |
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| Q |
231 |
tatattc |
237 |
Q |
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| T |
19052694 |
tatattc |
19052688 |
T |
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