View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19366_high_15 (Length: 326)

Name: NF19366_high_15
Description: NF19366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19366_high_15
NF19366_high_15
[»] chr3 (2 HSPs)
chr3 (125-302)||(46594936-46595114)
chr3 (1-56)||(46595182-46595237)
[»] chr6 (4 HSPs)
chr6 (125-302)||(4435724-4435902)
chr6 (125-301)||(4091945-4092123)
chr6 (1-56)||(4435601-4435656)
chr6 (1-56)||(4091822-4091877)
[»] chr4 (2 HSPs)
chr4 (125-302)||(47521207-47521386)
chr4 (1-52)||(47521084-47521135)
[»] chr5 (3 HSPs)
chr5 (167-302)||(37719256-37719392)
chr5 (1-56)||(37719424-37719479)
chr5 (19-56)||(30440652-30440689)
[»] chr1 (5 HSPs)
chr1 (125-281)||(16960829-16960987)
chr1 (125-244)||(25868922-25869043)
chr1 (224-293)||(26496088-26496157)
chr1 (1-56)||(25868799-25868854)
chr1 (1-52)||(16961059-16961110)


Alignment Details
Target: chr3 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 125 - 302
Target Start/End: Complemental strand, 46595114 - 46594936
Alignment:
Q  125 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacggaggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595114 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggaggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 46595015  T
Q  224 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595014 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 46594936  T

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Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 46595237 - 46595182
Alignment:
Q  1 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46595237 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 46595182  T

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Target: chr6 (Bit Score: 167; Significance: 2e-89; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 125 - 302
Target Start/End: Original strand, 4435724 - 4435902
Alignment:
Q  125 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacggaggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 223  Q
    |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435724 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggagactctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgaca 4435823  T
Q  224 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435824 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 4435902  T

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Target: chr6; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 125 - 301
Target Start/End: Original strand, 4091945 - 4092123
Alignment:
Q  125 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 222  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  4091945 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggctctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgac 4092044  T
Q  223 agatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtg 301  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4092045 aggtgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttagaatttgtttaccaatgtg 4092123  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4435601 - 4435656
Alignment:
Q  1 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 56  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4435601 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 4435656  T

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Target: chr6; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 4091822 - 4091877
Alignment:
Q  1 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 56  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4091822 caatctatcccaatctgatgtatgctaatttgttaatttcagaattaaatatctgg 4091877  T

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Target: chr4 (Bit Score: 136; Significance: 6e-71; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 125 - 302
Target Start/End: Original strand, 47521207 - 47521386
Alignment:
Q  125 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 222  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  47521207 aaacaatggtatttttgagaataaaaagtggtaaaaagaacggcaggttctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgac 47521306  T
Q  223 agatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgtttaccaatgtga 302  Q
    || ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||    
T  47521307 aggtgcatttgtcaatgtagaatctcttttgtttaaacaggttgtatatcattgtttttagaatttgtttaccaatgtga 47521386  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 47521084 - 47521135
Alignment:
Q  1 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatat 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||    
T  47521084 caatctatctcaatctgatgtatgctaatttgttaattttagaatcaaatat 47521135  T

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Target: chr5 (Bit Score: 129; Significance: 9e-67; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 167 - 302
Target Start/End: Complemental strand, 37719392 - 37719256
Alignment:
Q  167 aggctctgtttagttcaaccaaaattgttcagaatgttg-aagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggtt 265  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37719392 aggctctgtttagttcaaccaaaattgttcagaatgttggaagctatgtattttgacagatgcatttgtcaatgtagaatctcttttgttttaacaggtt 37719293  T
Q  266 gtatatcactgtttttataatttgtttaccaatgtga 302  Q
    |||||||||||||||||||||||||||||||||||||    
T  37719292 gtatatcactgtttttataatttgtttaccaatgtga 37719256  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 37719479 - 37719424
Alignment:
Q  1 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 56  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  37719479 caatctatcccaatctgatgtatgctaatttgctaattttagaattaaatatctgg 37719424  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 30440689 - 30440652
Alignment:
Q  19 tgtatgctaatttgttaattttagaattaaatatctgg 56  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  30440689 tgtatgctaatttgtgaattttagaattaaatatctgg 30440652  T

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Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 125 - 281
Target Start/End: Complemental strand, 16960987 - 16960829
Alignment:
Q  125 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 222  Q
    |||||||||||||||||||||||||| ||||||||||||| || | |||||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  16960987 aaacaatggtatttttgagaataaaaagtggtaaaaagaatggcatgctctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgac 16960888  T
Q  223 agatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgttttt 281  Q
    || |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16960887 aggtgcatttgtcaatgtagaatctcttttgttttaacaggttttatatcactgttttt 16960829  T

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Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 125 - 244
Target Start/End: Original strand, 25868922 - 25869043
Alignment:
Q  125 aaacaatggtatttttgagaataaaa-gtggtaaaaagaacgg-aggctctgtttagttcaaccaaaattgttcagaatgttgaagctatgtattttgac 222  Q
    |||||||||||||||||||||||||| |||||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||||||||||||     
T  25868922 aaacaatggtatttttgagaataaaaagtggtaaaaagaactgcaggctctgtttaattcaaccaaaattgttaagaatgttgaagctatgtattttgat 25869021  T
Q  223 agatgcatttgtcaatgtagaa 244  Q
    ||||||||||||||||||||||    
T  25869022 agatgcatttgtcaatgtagaa 25869043  T

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Target: chr1; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 224 - 293
Target Start/End: Original strand, 26496088 - 26496157
Alignment:
Q  224 gatgcatttgtcaatgtagaatctcttttgttttaacaggttgtatatcactgtttttataatttgttta 293  Q
    |||||||||||   ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  26496088 gatgcatttgttgctgtagaatctcttttgttttaacaggttgtatatcactgtttttagaatttgttta 26496157  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 25868799 - 25868854
Alignment:
Q  1 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatatctgg 56  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  25868799 caatctatcccaatctgatgtatgctaatttattaattttagaattaaatatctgg 25868854  T

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Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 16961110 - 16961059
Alignment:
Q  1 caatctatcccaatctgatgtatgctaatttgttaattttagaattaaatat 52  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  16961110 caatctatcacaatctgatgtatgctaatttgttaattttagaattaaatat 16961059  T

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