View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19366_high_2 (Length: 452)
Name: NF19366_high_2
Description: NF19366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19366_high_2 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 431; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 452
Target Start/End: Original strand, 14812581 - 14813011
Alignment:
| Q |
22 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812581 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
14812680 |
T |
|
| Q |
122 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812681 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
14812780 |
T |
|
| Q |
222 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812781 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttc |
14812880 |
T |
|
| Q |
322 |
tgtattgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14812881 |
tgtattgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaat |
14812980 |
T |
|
| Q |
422 |
tttctatccggattaatctaagcatgtggtt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
14812981 |
tttctatccggattaatctaagcatgtggtt |
14813011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 22 - 452
Target Start/End: Original strand, 15259576 - 15260006
Alignment:
| Q |
22 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259576 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
15259675 |
T |
|
| Q |
122 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259676 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
15259775 |
T |
|
| Q |
222 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259776 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttc |
15259875 |
T |
|
| Q |
322 |
tgtattgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15259876 |
tgtattgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaat |
15259975 |
T |
|
| Q |
422 |
tttctatccggattaatctaagcatgtggtt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
15259976 |
tttctatccggattaatctaagcatgtggtt |
15260006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 22 - 452
Target Start/End: Complemental strand, 17521599 - 17521169
Alignment:
| Q |
22 |
acatcatcaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
121 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521599 |
acatcaccaccttgtcaagaataatttcctcactatttccttcgaaacctttccttaatttgacatccaagaacgacgaaagaaactctggcaaattgtg |
17521500 |
T |
|
| Q |
122 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521499 |
attcaagttaataatgtactcaaatgatgagtccagcactccatggaattcttcatcatgattaaatgccaagtttaatatactatcatatttatctttc |
17521400 |
T |
|
| Q |
222 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttc |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521399 |
atgtccaaaagttcttgaacaaaaatcataggatcctttaacctttttggatcttttacaaacttttcacctgtgtttctaacagagattcgctactttc |
17521300 |
T |
|
| Q |
322 |
tgtattgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaat |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17521299 |
tgtattgtaaagagtccattaggatatgtagagaaaatctggtacaagtttctcaaatcttcatatctattattaagaaagagagttactaaccaagaat |
17521200 |
T |
|
| Q |
422 |
tttctatccggattaatctaagcatgtggtt |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
17521199 |
tttctatccggattaatctaagcatgtggtt |
17521169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University