View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19366_high_5 (Length: 379)
Name: NF19366_high_5
Description: NF19366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19366_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 35 - 367
Target Start/End: Complemental strand, 34925897 - 34925565
Alignment:
| Q |
35 |
gatttgtttcttcttatgtatgtgccttgatgcagagcttcatgtctgaagctgagtacgcaggctaactctatctctattcaatttatttatagtttca |
134 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925897 |
gatttgtttcttcttatgtatgtgccttgatgcagagcttcatgtctgaagctgagtacgcaggctaactctatctctattcaatttatttatagtttca |
34925798 |
T |
|
| Q |
135 |
tagtcttaatgaggaaagtcattagtatcataattcataagttaagcattttattcaataaattgtgtcgctttataagaccttctcacttgtatactgt |
234 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925797 |
tagtcttaatgaggaaagtcattagtatcataattcataagttaagcattttattcaataaattgtgtcgctttataagaccttctcacttgtatactgt |
34925698 |
T |
|
| Q |
235 |
tgagggattatattaatgcaatgttctgcgtgtgctgataagcaatgtaaaatttgaaattccaaccatatagaatgtaaagtacaaaattggttcatat |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34925697 |
tgagggattatattaatgcaatgttctgcgtgtgctgataagcaatgtcaaatttgaaattccaaccatatagaatgtaaagtacaaaattggttcatat |
34925598 |
T |
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| Q |
335 |
aaattttgaatattttaatattttcatggtctg |
367 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
34925597 |
aaattttgaatattttaatattttcatggtctg |
34925565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 35 - 367
Target Start/End: Complemental strand, 50376815 - 50376485
Alignment:
| Q |
35 |
gatttgtttcttcttatgtatgtgccttgatgcagagcttcatgtctgaagctgagtacgcaggctaactctatctctattcaatttatttatagtttca |
134 |
Q |
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|||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||||||||||||||||||||| |
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| T |
50376815 |
gatttgttgtttcttatttatgtgccttgatgcagagcttcatgtctgaagctgagg--gcaggctaactcgatatctattcaatttatttatagtttca |
50376718 |
T |
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| Q |
135 |
tagtcttaatgaggaaagtcattagtatcataattcataagttaagcattttattcaataaattgtgtcgctttataagaccttctcacttgtatactgt |
234 |
Q |
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|||||||| ||| |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
50376717 |
tagtcttattgaagaaagtcatttgtatcataattcataagttaaacatttcattcaataaattgtgtcgctttataagaccttctcacttatatactgt |
50376618 |
T |
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| Q |
235 |
tgagggattatattaatgcaatgttctgcgtgtgctgataagcaatgtaaaatttgaaattccaaccatatagaatgtaaagtacaaaattggttcatat |
334 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
50376617 |
tgagggattatattaatgcactgttctgcgtgtgctgataagcaatgttaaatttgaaattccaaccatatagaatgtaaattacaaaattggtttgtat |
50376518 |
T |
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| Q |
335 |
aaattttgaatattttaatattttcatggtctg |
367 |
Q |
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| ||||| ||| ||| | |||||||||||||| |
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| T |
50376517 |
atattttaaatttttgaccattttcatggtctg |
50376485 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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