View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19366_high_9 (Length: 362)
Name: NF19366_high_9
Description: NF19366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19366_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 13652938 - 13653292
Alignment:
| Q |
1 |
tctttcaactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcacca |
100 |
Q |
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| T |
13652938 |
tctttcaactccaatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcacca |
13653037 |
T |
|
| Q |
101 |
caacaatgacgagagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaa |
200 |
Q |
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| T |
13653038 |
caacaatgacgagagaagaaatacttgagttttggcacggtttgttgaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaa |
13653137 |
T |
|
| Q |
201 |
aacactaataaaagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggt |
300 |
Q |
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| T |
13653138 |
aagactaataaaagaacttgaggaagggactagtaaggagaaaggtttgattgtggagtgggctccacaagaggaagttttgtcacataaggcaattggt |
13653237 |
T |
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| Q |
301 |
gcttttttgacacatagtggatggaattctactttggagagtgtggtctgtggtg |
355 |
Q |
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| T |
13653238 |
gcttttttgacacatagtggatggaattctactttggagagtgtggtttgtggtg |
13653292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 13658422 - 13658765
Alignment:
| Q |
12 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
111 |
Q |
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| T |
13658422 |
caatttcttcgaagtggatagaacttgcatgacatggcttgaatctcaaccgttgaaatcggttgtatatgttagctttggtagcatcaccccaatgaag |
13658521 |
T |
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| Q |
112 |
agagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataa |
211 |
Q |
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| T |
13658522 |
ggagaagaaatcattgagatttggcacggtttattgaatagcaaaaaaccatttttgtgggtgattaggccaaacatggtacaagaaaaaggactattga |
13658621 |
T |
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| Q |
212 |
aagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgac |
311 |
Q |
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| T |
13658622 |
aggagcttgaggaagggactactaaagagaaagggatgattgtggggtgggttccacaagaggaagttttgtcacacaaagcaattggtgcctttttgac |
13658721 |
T |
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| Q |
312 |
acatagtggatggaattctactttggagagtgtggtctgtggtg |
355 |
Q |
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| T |
13658722 |
acatagtggatggaattctactttggagagtgtggtttgtggtg |
13658765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 13647894 - 13648237
Alignment:
| Q |
12 |
caatttcttcaaagtggatagaacctgcatgacatggctcgaatctcaaccgttgaagtcagttgtatatgttagctttggaagcaccacaacaatgacg |
111 |
Q |
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||||||||||||||||||||||||||||||| | ||||| || |||||||| ||||| |||||| |||||||||||||||||||||| ||| |||||| | |
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| T |
13647894 |
caatttcttcaaagtggatagaacctgcatggcgtggcttgactctcaaccattgaaatcagttatatatgttagctttggaagcactacaccaatgaag |
13647993 |
T |
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| Q |
112 |
agagaagaaatacttgagttttggcacggtttgttaaacagcaaaaaagcattcttgtgggtgattagaccaaacatggtacaagaaaaaacactaataa |
211 |
Q |
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|||||||||||| ||||| ||||||| ||||| || || ||||||||| || || ||||||||||| ||||||||||||||||||||| | || ||| |
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| T |
13647994 |
agagaagaaataattgagatttggcatggtttattgaatagcaaaaaacagtttttatgggtgattaggccaaacatggtacaagaaaaaggattattaa |
13648093 |
T |
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| Q |
212 |
aagaacttaaggaaaggactactaaggagagaggtttgattgtggagtgggctccacaagaggaagttttgtcacatgaggcaattggtgcttttttgac |
311 |
Q |
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| T |
13648094 |
gtgagcttgaggaagggactcgtaaggaaaaaggtttgattgttgggtgggtcccacaagaggaagttttgtcacataaggcaattggtgcttttttgac |
13648193 |
T |
|
| Q |
312 |
acatagtggatggaattctactttggagagtgtggtctgtggtg |
355 |
Q |
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| T |
13648194 |
acataatgggtggaattcaactttggaaagtgtggtttgtggtg |
13648237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 20156911 - 20156862
Alignment:
| Q |
280 |
ttgtcacatgaggcaattggtgcttttttgacacatagtggatggaattc |
329 |
Q |
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| T |
20156911 |
ttgtcacataaagcaataggtgcatttttgacacattgtggatggaattc |
20156862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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