View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19366_low_1 (Length: 361)
Name: NF19366_low_1
Description: NF19366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19366_low_1 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 1581057 - 1580712
Alignment:
| Q |
16 |
atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1581057 |
atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt |
1580958 |
T |
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| Q |
116 |
taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
1580957 |
taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgat |
1580858 |
T |
|
| Q |
216 |
cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcact |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1580857 |
cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcact |
1580758 |
T |
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| Q |
316 |
cttcttttcgccttatcagccatgctaccttcatcacttgagcgac |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1580757 |
cttcttttcgccttatcagccatgctaccttcatcacttgagcgac |
1580712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 361
Target Start/End: Original strand, 1603758 - 1604103
Alignment:
| Q |
16 |
atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1603758 |
atcacttctataccaaccagtttacttttagtgccccgatcctttctaccaaaagtcttcttctctgtgtcgttgagaaaatcatcagctatatcttctt |
1603857 |
T |
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| Q |
116 |
taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactctttgat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
1603858 |
taagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcagtgccattcaactctttgat |
1603957 |
T |
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| Q |
216 |
cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggtttcact |
315 |
Q |
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| T |
1603958 |
cttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgtttttttggtaccatcttcttcgtgctctttggtttcact |
1604057 |
T |
|
| Q |
316 |
cttcttttcgccttatcagccatgctaccttcatcacttgagcgac |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1604058 |
cttcttttcgccttatcagccatgctaccttcatcacttgagcgac |
1604103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 322
Target Start/End: Complemental strand, 1587463 - 1587251
Alignment:
| Q |
110 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
209 |
Q |
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|||||||||| | ||||||||||||| |||||| | ||||||||||| || |||||| ||||||||||||| |||||||||| | ||||| ||||| |
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| T |
1587463 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatctgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
1587364 |
T |
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| Q |
210 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
309 |
Q |
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| T |
1587363 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt |
1587264 |
T |
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| Q |
310 |
ttcactcttcttt |
322 |
Q |
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|| |||||||||| |
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| T |
1587263 |
ttaactcttcttt |
1587251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 110 - 322
Target Start/End: Original strand, 1590760 - 1590972
Alignment:
| Q |
110 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
209 |
Q |
| |
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|||||||||| | ||||||||||||| |||||| | |||||||| || || |||||| ||||||||||||| |||||||||| | ||||| ||||| |
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| T |
1590760 |
cttctttaagcggcattaaaagacgattttggtcatccctgagatccgacgcagacaattttttacacatgatatttttgatatcagtgccattaaactc |
1590859 |
T |
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| Q |
210 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
309 |
Q |
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|||||||||| |||| || | ||||||||||||||| |||||||||||||| ||||||||||| || ||| |||||||||||| |||||||| |
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| T |
1590860 |
tttgatcttgttctcaacgtgaataggcaatattggtggaggtgatgacaaattttccttatcatgtttttttggtttgatcttcttcgtggtctttggt |
1590959 |
T |
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| Q |
310 |
ttcactcttcttt |
322 |
Q |
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|| || ||||||| |
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| T |
1590960 |
ttaacacttcttt |
1590972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 110 - 322
Target Start/End: Original strand, 19270343 - 19270555
Alignment:
| Q |
110 |
cttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaactc |
209 |
Q |
| |
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||||||||| |||||||| |||||| |||||| | |||||| ||| ||||||||| |||| |||||||| |||||||||| | ||||||||||| |
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| T |
19270343 |
cttctttaatcgacattaatagacgattttggtcatctttgagatttgatgcaaacaattttttacccatgatatatttgatatcagtgccattcaactc |
19270442 |
T |
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| Q |
210 |
tttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttgnnnnnnnggtaccatcttcttcgtgctctttggt |
309 |
Q |
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|||||||||| |||| | | ||||||||||||||| ||||| |||||||| |||||||||||||| ||| |||||||||||||||||||||| |
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| T |
19270443 |
tttgatcttgttctctatgtgaataggcaatattggtggaggagatgacaaattttccttatcttgtttttttggtttcatcttcttcgtgctctttggt |
19270542 |
T |
|
| Q |
310 |
ttcactcttcttt |
322 |
Q |
| |
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||||||||||||| |
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| T |
19270543 |
ttcactcttcttt |
19270555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 109 - 275
Target Start/End: Original strand, 39616012 - 39616178
Alignment:
| Q |
109 |
tcttctttaagtgacattaaaagacgactttggtgtttactgagatctgaatcaaacaattccttacacatgatatgtttgatatcaattccattcaact |
208 |
Q |
| |
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||||||||||||| ||||||||||||||||||| || | || |||||| ||||||||| ||| ||||||||| | |||||||| | |||||||||| |
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| T |
39616012 |
tcttctttaagtggcattaaaagacgactttggccttcatcgatatctgacgcaaacaatttctttgacatgatatatctgatatcagtgccattcaact |
39616111 |
T |
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| Q |
209 |
ctttgatcttgatctcgacatcaataggcaatattggcggaggtgatgacaatttttccttatcttg |
275 |
Q |
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| ||||||||| ||| ||||| |||||| ||||||||||||||| | | ||| |||| ||||||||| |
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| T |
39616112 |
ccttgatcttgttcttgacattaataggtaatattggcggaggtaaagccaaatttttcttatcttg |
39616178 |
T |
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