View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19367_high_10 (Length: 228)
Name: NF19367_high_10
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19367_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 7675245 - 7675053
Alignment:
| Q |
18 |
caaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggt |
117 |
Q |
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| T |
7675245 |
caaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggt |
7675146 |
T |
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| Q |
118 |
gggagtggtagtgatgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
210 |
Q |
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| T |
7675145 |
gggagtggtagtgatgaagttcttgttgcaaacttcaccaaacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
7675053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 37 - 210
Target Start/End: Complemental strand, 7659599 - 7659426
Alignment:
| Q |
37 |
gccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtgggagtggtagtgatgaag |
136 |
Q |
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| T |
7659599 |
gccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtggaagtggtagtgatgaag |
7659500 |
T |
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| Q |
137 |
ttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
210 |
Q |
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| T |
7659499 |
atctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctaatgcaatgaaccataga |
7659426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 7624068 - 7624259
Alignment:
| Q |
19 |
aaagggccataggtttcagccaaggttgcaagagattggtgtggtgcagggccaaggtgtggtaagttacctattattggccatggttttggtccaggtg |
118 |
Q |
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| T |
7624068 |
aaagggccatggatttttgccaaggctgcaatagactggtgtggggcaggacccaagtgtggcatgttacctattataggccatggttttggtccaggtg |
7624167 |
T |
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| Q |
119 |
ggagtggtagtgatgaagttcttgttgcaaacttcaccagacggtatattaagattgataatatgcaactagagaatgcaatgagccataga |
210 |
Q |
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| T |
7624168 |
gaagtggtagtgatgaagatctttttgcaaatttcataaaacggtatatgaggatgcataatgtgaaactagctattgcaatgaaccataga |
7624259 |
T |
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