View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19367_high_5 (Length: 268)

Name: NF19367_high_5
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19367_high_5
NF19367_high_5
[»] chr7 (9 HSPs)
chr7 (109-260)||(18568366-18568517)
chr7 (109-260)||(18633460-18633611)
chr7 (109-260)||(18646172-18646323)
chr7 (109-260)||(18648757-18648908)
chr7 (110-252)||(36791587-36791729)
chr7 (111-260)||(18591131-18591280)
chr7 (111-260)||(18620405-18620554)
chr7 (110-260)||(18653440-18653590)
chr7 (109-260)||(18634396-18634548)
[»] chr8 (1 HSPs)
chr8 (15-109)||(3915588-3915682)
[»] chr5 (2 HSPs)
chr5 (110-251)||(7489035-7489176)
chr5 (110-251)||(32284327-32284468)


Alignment Details
Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 109 - 260
Target Start/End: Original strand, 18568366 - 18568517
Alignment:
Q  109 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 208  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| ||||||||||||||    
T  18568366 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacacttt 18568465  T
Q  209 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18568466 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18568517  T

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Target: chr7; HSP #2
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 18633611 - 18633460
Alignment:
Q  109 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 208  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| |||    
T  18633611 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacatttt 18633512  T
Q  209 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18633511 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18633460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 18646323 - 18646172
Alignment:
Q  109 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 208  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| |||    
T  18646323 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacatttt 18646224  T
Q  209 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18646223 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18646172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 18648908 - 18648757
Alignment:
Q  109 aggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttt 208  Q
    |||||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| |||    
T  18648908 aggtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacatttt 18648809  T
Q  209 ttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
     |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18648808 ctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18648757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 110 - 252
Target Start/End: Original strand, 36791587 - 36791729
Alignment:
Q  110 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 209  Q
    ||||||||||||||||||| |||||||||| ||||||||||| |||||||||||  |||||||||||||||||||| ||||||| |||||||||| |||     
T  36791587 ggtggattctaaggtgagggccctatcaagtccctcaccgatgaaccatcattatgagcaattggattaatataatccatacatcttattgtacaatttc 36791686  T
Q  210 tacacttgattacaattaccttctccctttcaccaacaatcac 252  Q
    ||||||||||||| |||||||||||||||||||||||||||||    
T  36791687 tacacttgattacgattaccttctccctttcaccaacaatcac 36791729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 260
Target Start/End: Original strand, 18591131 - 18591280
Alignment:
Q  111 gtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttttt 210  Q
    |||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||| |    
T  18591131 gtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacattttct 18591230  T
Q  211 acacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18591231 acacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18591280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 111 - 260
Target Start/End: Complemental strand, 18620554 - 18620405
Alignment:
Q  111 gtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacacttttt 210  Q
    |||||||||||||||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||| |    
T  18620554 gtggattctaaggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacattttct 18620455  T
Q  211 acacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18620454 acacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18620405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 110 - 260
Target Start/End: Complemental strand, 18653590 - 18653440
Alignment:
Q  110 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 209  Q
    ||||||||||||||||||| | ||||||| ||| | |||| | |||||||||||| || ||||||||||||||||| ||||||| |||||||||||||||    
T  18653590 ggtggattctaaggtgagggctctatcaaaccctttaccggtgaaccatcattaagagtaattggattaatataatccatacatcttattgtacactttt 18653491  T
Q  210 tacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  18653490 tacacttgattacaattaccttctccatttcaccaacaatcaccttttgct 18653440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 109 - 260
Target Start/End: Complemental strand, 18634548 - 18634396
Alignment:
Q  109 aggtggattctaagg-tgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactt 207  Q
    ||||||||||||||| ||||| | |||||||||||||||||| | | |||||| ||| |||||||||||||||||||| ||||||| |||||||||| ||    
T  18634548 aggtggattctaagggtgagggctctatcaagcccctcaccggtgatccatcaataagagcaattggattaatataatccatacatcttattgtacattt 18634449  T
Q  208 tttacacttgattacaattaccttctccctttcaccaacaatcaccctttgct 260  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  18634448 tctacacttgattacaattaccttctccctttcaccaacaatcaccttttgct 18634396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 109
Target Start/End: Complemental strand, 3915682 - 3915588
Alignment:
Q  15 aatatttactctacgagttgatttgataattccaaagaagaaaagatttgaagctttcgtaaagtttcaaaaggttctaaacataaatttattga 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  3915682 aatatttactctacgagttgatttgataattccaaagaagaaaagatttgaagctttcgtacagtttcaaaaggttctaaacataaatttattga 3915588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 7489176 - 7489035
Alignment:
Q  110 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 209  Q
    |||||||||||||||||||  ||||||||| ||||||| | |  ||||| ||||| |||||||||||||||  ||| ||||||| ||||||||||||||     
T  7489176 ggtggattctaaggtgagggtcctatcaagtccctcactggtggaccattattaagagcaattggattaatcaaatccatacatcttattgtacactttc 7489077  T
Q  210 tacacttgattacaattaccttctccctttcaccaacaatca 251  Q
    |||||| ||||||||||| ||||||||||||||||| |||||    
T  7489076 tacactagattacaattatcttctccctttcaccaataatca 7489035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 110 - 251
Target Start/End: Complemental strand, 32284468 - 32284327
Alignment:
Q  110 ggtggattctaaggtgaggaccctatcaagcccctcaccgataaaccatcattaaaagcaattggattaatataatacatacattttattgtacactttt 209  Q
    |||||||||||||||||||| ||||||||| |||| |||  |  ||||| ||||| |||||||||||||||  ||| ||||||| ||||| ||||||||     
T  32284468 ggtggattctaaggtgaggatcctatcaagtcccttacctgtggaccattattaagagcaattggattaatcaaattcatacatcttattatacactttc 32284369  T
Q  210 tacacttgattacaattaccttctccctttcaccaacaatca 251  Q
    | |||| ||| ||||||| |||||||||| ||||||||||||    
T  32284368 tgcactagatcacaattatcttctcccttccaccaacaatca 32284327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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