View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19367_low_11 (Length: 237)
Name: NF19367_low_11
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19367_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 17 - 221
Target Start/End: Complemental strand, 42015500 - 42015297
Alignment:
| Q |
17 |
cataagctctttgaaagagccttgcaactacttatattatcaatatggttccgtaactttgtttggacagctcaataagctagctagcttttaaacccat |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
42015500 |
cataagctctttgaaaaagccttgcaactacttatattatcaatatggttccgtaactttgtttggacagctcaataagctagctagcttttaaactcat |
42015401 |
T |
|
| Q |
117 |
ataactnnnnnnngactcgtttggtgaccatcattttctaacaagctaatggtttatttttattagcttatagcggttttcgataagctacttcaaagta |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
42015400 |
ataactaaaaaaagactcgtttggtgaccatcattttctaacaagctaatggtttatttttattagcttatagcggtttacgataagctacttc-aagta |
42015302 |
T |
|
| Q |
217 |
gcttt |
221 |
Q |
| |
|
||||| |
|
|
| T |
42015301 |
gcttt |
42015297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 9198252 - 9198201
Alignment:
| Q |
170 |
ttatttttattagcttatagcggttttcgataagctacttcaaagtagctttt |
222 |
Q |
| |
|
||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| |
|
|
| T |
9198252 |
ttatttttactagcttatagcggtttttgataagctaattc-aagtagctttt |
9198201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 42139378 - 42139423
Alignment:
| Q |
151 |
tttctaacaagctaatggtttatttttattagcttatagcggtttt |
196 |
Q |
| |
|
||||| ||||||| || | ||||||||||||||||||||||||||| |
|
|
| T |
42139378 |
tttctcacaagcttatagcttatttttattagcttatagcggtttt |
42139423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 12238650 - 12238598
Alignment:
| Q |
160 |
agctaatggtttatttttattagcttatagcggttttcgataagctacttcaa |
212 |
Q |
| |
|
|||| |||| ||||||| || || ||||||||||||||||||||||| ||||| |
|
|
| T |
12238650 |
agcttatggcttattttcatgagtttatagcggttttcgataagctaattcaa |
12238598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University