View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19367_low_13 (Length: 227)
Name: NF19367_low_13
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19367_low_13 |
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| [»] scaffold0454 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 1483393 - 1483501
Alignment:
| Q |
16 |
atgaaccatgaagatcgttgttgtaatataagtcgataaatgacagtgctgcaatctgaaagatcttctgcggaaatgttccggtcaatccacaatattc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
1483393 |
atgaaccatgaagatcgttgttgtaatataagtcgataaatgacagtgctgcaatctgaaagatcttttgcggaaatgttccgatcaatccacaatattc |
1483492 |
T |
|
| Q |
116 |
aagactaag |
124 |
Q |
| |
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||||||||| |
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| T |
1483493 |
aagactaag |
1483501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 1485695 - 1485786
Alignment:
| Q |
119 |
actaaggatggtcaggtttttaaaattggcaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgacggttaggttct |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1485695 |
actaaggatggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttct |
1485786 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 16 - 209
Target Start/End: Complemental strand, 5852875 - 5852682
Alignment:
| Q |
16 |
atgaaccatgaagatcgttgttgtaatataagtcgataaatgacagtgctgcaatctgaaagatcttctgcggaaatgttccggtcaatccacaatattc |
115 |
Q |
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|||||||||| |||| | ||||||| || ||| |||| ||||||| | ||||||||||||||||||| |||||||| || ||||||||||||| | |
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| T |
5852875 |
atgaaccatggagattgctgttgtatgttatgtcaataacagacagtgttccaatctgaaagatcttctgtggaaatgtaccagtcaatccacaatctga |
5852776 |
T |
|
| Q |
116 |
aagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgacggttaggttc |
209 |
Q |
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| T |
5852775 |
aagactaagggtggtcaggttttgaaaattagcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttc |
5852682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 67 - 208
Target Start/End: Original strand, 5553598 - 5553739
Alignment:
| Q |
67 |
caatctgaaagatcttctgcggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattgg |
166 |
Q |
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|||| ||||||||||| || |||||||| || || ||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||||| || |
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| T |
5553598 |
caatttgaaagatcttttgtggaaatgtacctgttaatccacaagatgtaagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacggg |
5553697 |
T |
|
| Q |
167 |
cgatgaaagattgttcttatcaagaataatgacggttaggtt |
208 |
Q |
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|| |||| ||||||| |||||||||||||||| | |||||| |
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| T |
5553698 |
ggaagaaaaattgttcctatcaagaataatgaccgataggtt |
5553739 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 5858453 - 5858596
Alignment:
| Q |
67 |
caatctgaaagatcttctgcggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattgg |
166 |
Q |
| |
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||||||||||||||||||| |||||||| |||| ||| ||||| || ||||||| ||| | |||| |||||||||||| ||||||||||| |||| ||| |
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| T |
5858453 |
caatctgaaagatcttctgtggaaatgtaccggataatgcacaaaatgcaagactgagggtagtcaagtttttaaaatttgcaaatgtttcaggaactgg |
5858552 |
T |
|
| Q |
167 |
cgatgaaagattgttcttatcaagaataatgacggttaggttct |
210 |
Q |
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||||||| || ||||| ||||||||||||||| | |||||||| |
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| T |
5858553 |
ggatgaaaaatagttctcatcaagaataatgactgataggttct |
5858596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 67 - 210
Target Start/End: Original strand, 5565189 - 5565332
Alignment:
| Q |
67 |
caatctgaaagatcttctgcggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattgg |
166 |
Q |
| |
|
|||||||||| || || || |||||||| |||||||| ||||||| | ||||||| ||| |||||||||||||||||||||||||||||| ||| | ||| |
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| T |
5565189 |
caatctgaaaaatattttgtggaaatgtaccggtcaacccacaatctacaagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactgg |
5565288 |
T |
|
| Q |
167 |
cgatgaaagattgttcttatcaagaataatgacggttaggttct |
210 |
Q |
| |
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||||||| ||| || | | ||||||||||||| | |||||||| |
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| T |
5565289 |
ggatgaaaaattattgtcaccaagaataatgactgataggttct |
5565332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 5605527 - 5605639
Alignment:
| Q |
87 |
ggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattggcgatgaaagattgttcttat |
186 |
Q |
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||||||||||| ||||||||||||| | |||| | ||| |||| ||||||||||||||||||||||||||||| | ||| ||||||| ||||||| || |
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| T |
5605527 |
ggaaatgttccagtcaatccacaatcgttaagattgagggtggttaggtttttaaaattggcaaatgtttctggcactggggatgaaaaattgttcccat |
5605626 |
T |
|
| Q |
187 |
caagaataatgac |
199 |
Q |
| |
|
|||||| |||||| |
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| T |
5605627 |
caagaagaatgac |
5605639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 43 - 210
Target Start/End: Complemental strand, 5886189 - 5886022
Alignment:
| Q |
43 |
ataagtcgataaatgacagtgctgcaatctgaaagatcttctgcggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaa |
142 |
Q |
| |
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||||||| |||| |||||||| | ||| || |||||||| || |||||||| | |||||||| |||| || |||| | ||| |||| ||||||||||| |
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| T |
5886189 |
ataagtcaataattgacagtgttctaatttggaagatcttttgtggaaatgtatctgtcaatccgcaattttgaagattgagggtggttaggtttttaaa |
5886090 |
T |
|
| Q |
143 |
attggcaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgacggttaggttct |
210 |
Q |
| |
|
|||||||||||||| ||| | ||| ||||||| |||||||| ||||||||||||| | |||||||| |
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|
| T |
5886089 |
attggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttct |
5886022 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 3749330 - 3749484
Alignment:
| Q |
56 |
tgacagtgctgcaatctgaaagatcttctgcggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtt |
155 |
Q |
| |
|
|||||||| | ||||||||||||| || |||||||| ||||||||| ||||| ||||||| ||| |||||| |||||||||||||||||||||| |
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|
| T |
3749330 |
tgacagtgttccaatctgaaagattgcatgtggaaatgtaccggtcaattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgtt |
3749429 |
T |
|
| Q |
156 |
tctggaattggcgatgaaagattgttcttatcaagaataatgacggttaggttct |
210 |
Q |
| |
|
| || | ||| ||||||| ||||||| ||||||||||||||| | |||||||| |
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| T |
3749430 |
ttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttct |
3749484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 5570992 - 5570798
Alignment:
| Q |
16 |
atgaaccatgaagatcgttgttgtaatataagtcgataaatgacagtgctgcaatctgaaagatcttctgcggaaatgttccggtcaatccacaatattc |
115 |
Q |
| |
|
|||||||||| |||| || |||| | |||| || |||||||||| || | |||| |||||||| || || |||||||| || |||||||||||| || |
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| T |
5570992 |
atgaaccatggagattgtagttgaatgataaatcaataaatgacaatgttccaatttgaaagatattttgtggaaatgtacctgtcaatccacaagatga |
5570893 |
T |
|
| Q |
116 |
aagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgacggttaggttct |
210 |
Q |
| |
|
|||||| ||| |||| || ||||||||||||| |||||||||||| | | | ||||| | || |||| ||||||||||||||| | |||||||| |
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| T |
5570892 |
aagactgagggtggttagttttttaaaattggaaaatgtttctggcactagggatgagaaatagttcccatcaagaataatgactgataggttct |
5570798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 5895002 - 5894878
Alignment:
| Q |
75 |
aagatcttctgcggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattggcgatgaaa |
174 |
Q |
| |
|
|||||||| || |||||||| ||| |||||||||| | | |||| | ||| |||| ||||||||||||||||||||||||||||| | || ||||||| |
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|
| T |
5895002 |
aagatcttttgtggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttctggcaatgaggatgaaa |
5894903 |
T |
|
| Q |
175 |
gattgttcttatcaagaataatgac |
199 |
Q |
| |
|
|||||| || |||||||||||| |
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|
| T |
5894902 |
aattgtttcgataaagaataatgac |
5894878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 99 - 210
Target Start/End: Complemental strand, 5583116 - 5583005
Alignment:
| Q |
99 |
gtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatga |
198 |
Q |
| |
|
|||||||||||| || ||||||| ||| |||| | ||||| ||||||| |||||||| ||| | ||| ||||||| ||||||| |||||||||||||| |
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| T |
5583116 |
gtcaatccacaagatgcaagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttcccatcaagaataatga |
5583017 |
T |
|
| Q |
199 |
cggttaggttct |
210 |
Q |
| |
|
| | |||||||| |
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|
| T |
5583016 |
ctgataggttct |
5583005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 210
Target Start/End: Complemental strand, 5847930 - 5847807
Alignment:
| Q |
87 |
ggaaatgttccggtcaatccacaatattcaagactaaggatggtcaggtttttaaaattggcaaatgtttctggaattggcgatgaaagattgttcttat |
186 |
Q |
| |
|
|||||||| ||| |||||||||| | | |||| | ||| |||| ||||||||||||||||||||||||| ||| | ||| ||||||| ||||||| | |
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|
| T |
5847930 |
ggaaatgtaccgatcaatccacactttcgaagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagttgttctcac |
5847831 |
T |
|
| Q |
187 |
caagaataatgacggttaggttct |
210 |
Q |
| |
|
|||||| |||||| || ||||||| |
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|
| T |
5847830 |
caagaacaatgaccgtcaggttct |
5847807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0454 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: scaffold0454
Description:
Target: scaffold0454; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 876 - 968
Alignment:
| Q |
119 |
actaaggatggtcaggtttttaaaatt-ggcaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgacggttaggttct |
210 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
876 |
actaaggatggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttct |
968 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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