View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19367_low_14 (Length: 225)
Name: NF19367_low_14
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19367_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 120 - 211
Target Start/End: Complemental strand, 3478324 - 3478232
Alignment:
| Q |
120 |
acagtctgatcaaagtagcagttgcccgaattatatgaaatgatgatctcaaatgttggtcaatg-aaataattaagaacttaagatgtttgt |
211 |
Q |
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| T |
3478324 |
acagtctgatcaaagtagcagttgcccgaattatatgaaatgatgatctcaaatgttggtcaatgaaaataattaagaacttaagatgtttgt |
3478232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 35 - 131
Target Start/End: Complemental strand, 3478559 - 3478463
Alignment:
| Q |
35 |
agggaaattcggtggattgaaagccttatgtgatgggttcattggcaatgcatgcattggtaatgcttaagacttgttaactgatacagtctgatca |
131 |
Q |
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| T |
3478559 |
agggaaatttggtggattacaagccttatgtgatgggttcattggcaatgcatgcattggtaatgctcaagacttgttaactgatacagtctgatca |
3478463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 35 - 111
Target Start/End: Original strand, 3537958 - 3538031
Alignment:
| Q |
35 |
agggaaattcggtggattgaaagccttatgtgatgggttcattggcaatgcatgcattggtaatgcttaagacttgt |
111 |
Q |
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| T |
3537958 |
agggaaatttggtggattgaaagccttatgtgat-ggttcattggcaatgcat--atttgtaattcttaagacttgt |
3538031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 130
Target Start/End: Original strand, 15079538 - 15079627
Alignment:
| Q |
40 |
aattcggtggattgaaagccttatgtgatgggttcattggcaatgcatgcattggtaatgcttaagacttgttaactgatacagtctgatc |
130 |
Q |
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| T |
15079538 |
aatttggtggaatgaaagccttatgtgatag-ttcattggcaatgcatggattagtaatgctcaagacttgtgaactgatacagtctgatc |
15079627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 15166710 - 15166621
Alignment:
| Q |
40 |
aattcggtggattgaaagccttatgtgatgggttcattggcaatgcatgcattggtaatgcttaagacttgttaactgatacagtctgatc |
130 |
Q |
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| T |
15166710 |
aatttggtggaatgaaagccttatgtgatag-ttcattggcaatgcatggattagtaatgctcaagacttgtgaactgatacagtctgatc |
15166621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 40 - 130
Target Start/End: Complemental strand, 15162130 - 15162049
Alignment:
| Q |
40 |
aattcggtggattgaaagccttatgtgatgggttcattggcaatgcatgcattggtaatgcttaagacttgttaactgatacagtctgatc |
130 |
Q |
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| T |
15162130 |
aatttggtggactgaaagccttatgtgat-agttcattggcaatgcatggat--------cttaaaacttgtgaactgatacagtctgatc |
15162049 |
T |
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