View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19367_low_16 (Length: 214)

Name: NF19367_low_16
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19367_low_16
NF19367_low_16
[»] chr4 (16 HSPs)
chr4 (2-198)||(3671222-3671418)
chr4 (14-134)||(55619187-55619307)
chr4 (14-134)||(55626491-55626611)
chr4 (14-134)||(55657537-55657657)
chr4 (14-120)||(52983064-52983170)
chr4 (14-134)||(54630127-54630247)
chr4 (12-126)||(55663766-55663880)
chr4 (14-128)||(54860963-54861077)
chr4 (22-134)||(55637131-55637243)
chr4 (135-201)||(55663993-55664059)
chr4 (135-194)||(55636973-55637032)
chr4 (136-199)||(54861185-54861248)
chr4 (14-47)||(54630322-54630355)
chr4 (135-199)||(52983286-52983350)
chr4 (135-199)||(55619406-55619470)
chr4 (135-199)||(55657756-55657820)
[»] chr8 (2 HSPs)
chr8 (2-137)||(9891426-9891561)
chr8 (136-198)||(9891256-9891318)
[»] chr2 (2 HSPs)
chr2 (14-134)||(13403538-13403658)
chr2 (135-199)||(13403375-13403439)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 2 - 198
Target Start/End: Original strand, 3671222 - 3671418
Alignment:
Q  2 tgtaaccggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatc 101  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  3671222 tgtaaccggggtttttctccgcttctccaaccttcagaaaattctcaagacattgcaaacagacagtaacaatttttggatcagagcaaacgagcaaatc 3671321  T
Q  102 acacagaggcttaatgcaaccctggctcgccaaatactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttccttt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3671322 acacagaggcttaatgcaaccctggctcgccaaatactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttccttt 3671418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 55619187 - 55619307
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggctt 113  Q
    ||||||| |||||||||||||| ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  55619187 ttttctccgcttctccaacctttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggctt 55619286  T
Q  114 aatgcaaccctggctcgccaa 134  Q
    ||||||||| |||||| ||||    
T  55619287 aatgcaaccatggctcaccaa 55619307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 55626491 - 55626611
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggctt 113  Q
    ||||||| |||||||||||||| ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  55626491 ttttctccgcttctccaacctttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggctt 55626590  T
Q  114 aatgcaaccctggctcgccaa 134  Q
    ||||||||| |||||| ||||    
T  55626591 aatgcaaccatggctcaccaa 55626611  T

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Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 14 - 134
Target Start/End: Original strand, 55657537 - 55657657
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggctt 113  Q
    ||||||| |||||||||||||| ||||||||||||||||  | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  55657537 ttttctccgcttctccaacctttagaaaattctcaagaccatctaaacagacagaaacaatttttggatcagggcaaacaagcaaatcacacagaggctt 55657636  T
Q  114 aatgcaaccctggctcgccaa 134  Q
    ||||||||| |||||| ||||    
T  55657637 aatgcaaccatggctcaccaa 55657657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 52983064 - 52983170
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggctt 113  Q
    ||||||| ||||||||||||||||||| |||||||||||||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||    
T  52983064 ttttctccgcttctccaaccttcagaatattctcaagacattctaaacagacaataataatttttggatcagggcaaacaagcaaatcacacagaggctt 52983163  T
Q  114 aatgcaa 120  Q
    |||||||    
T  52983164 aatgcaa 52983170  T

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Target: chr4; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 54630247 - 54630127
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggctt 113  Q
    |||||||||||||||||||||| |||||||||||||||| || || ||| |||||||| ||| ||||||||| |||||| ||||||||||||||||||||    
T  54630247 ttttctctgcttctccaacctttagaaaattctcaagaccttctagacaaacagtaactattcttggatcagggcaaactagcaaatcacacagaggctt 54630148  T
Q  114 aatgcaaccctggctcgccaa 134  Q
    |||||||||||||||| ||||    
T  54630147 aatgcaaccctggctcaccaa 54630127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 55663766 - 55663880
Alignment:
Q  12 gtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggc 111  Q
    ||||||||| ||||||||||||| ||||||||||||||||| || ||| ||||||| ||||||| ||||||||| ||||||||||||||||||||||||     
T  55663766 gtttttctccgcttctccaacctccagaaaattctcaagaccttctaagcagacagcaacaattgttggatcagggcaaacaagcaaatcacacagaggt 55663865  T
Q  112 ttaatgcaaccctgg 126  Q
    |||||||||||||||    
T  55663866 ttaatgcaaccctgg 55663880  T

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Target: chr4; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 14 - 128
Target Start/End: Original strand, 54860963 - 54861077
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggctt 113  Q
    |||||||  |||||||||||||||||| ||||||||||| || || |||||||||||||||| ||||||||| |||||| | ||||||||||||||||||    
T  54860963 ttttctccacttctccaaccttcagaatattctcaagaccttctagacagacagtaacaattcttggatcagggcaaaccatcaaatcacacagaggctt 54861062  T
Q  114 aatgcaaccctggct 128  Q
    |||||||||||||||    
T  54861063 aatgcaaccctggct 54861077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 55637243 - 55637131
Alignment:
Q  22 gcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggcttaatgcaac 121  Q
    ||||||||||||||||||||||||||||||| || || ||| |||||||||||| ||||||||  |  | ||||||||||||||||||||||||||||||    
T  55637243 gcttctccaaccttcagaaaattctcaagaccttctagacaaacagtaacaattcttggatcatggatagcaagcaaatcacacagaggcttaatgcaac 55637144  T
Q  122 cctggctcgccaa 134  Q
    | |||||| ||||    
T  55637143 cttggctctccaa 55637131  T

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Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 201
Target Start/End: Original strand, 55663993 - 55664059
Alignment:
Q  135 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttccttttga 201  Q
    ||||| ||||||||||||||||| |||||||||||||||| | | ||||||||| ||||| ||||||    
T  55663993 atacttgatttgctcatgggtaccgccagatgtagcattaaataatgcccatgcagcttctttttga 55664059  T

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Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 55637032 - 55636973
Alignment:
Q  135 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttc 194  Q
    ||||| |||||||||||||||||  ||||||||| ||||| ||||||||||||| |||||    
T  55637032 atacttgatttgctcatgggtaccaccagatgtaacattaaagagtgcccatgcagcttc 55636973  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 199
Target Start/End: Original strand, 54861185 - 54861248
Alignment:
Q  136 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttt 199  Q
    |||| ||||||||| |||||||  || ||||||||||||| |||||||||||| ||||| ||||    
T  54861185 tacttgatttgctcgtgggtaccacctgatgtagcattagtgagtgcccatgcagcttcttttt 54861248  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 14 - 47
Target Start/End: Complemental strand, 54630355 - 54630322
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctc 47  Q
    |||||||||||||||||||||||||||| |||||    
T  54630355 ttttctctgcttctccaaccttcagaaatttctc 54630322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 52983286 - 52983350
Alignment:
Q  135 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttt 199  Q
    ||||| |||||||||| ||||||  | | | ||||||||||||||||||||||| ||||| ||||    
T  52983286 atacttgatttgctcaggggtaccactaaacgtagcattagagagtgcccatgcagcttcttttt 52983350  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 55619406 - 55619470
Alignment:
Q  135 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttt 199  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| ||||    
T  55619406 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttt 55619470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 199
Target Start/End: Original strand, 55657756 - 55657820
Alignment:
Q  135 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttt 199  Q
    ||||| |||||||||||| ||||   ||||||||||||||  |||||||||||| ||||| ||||    
T  55657756 atacttgatttgctcatgagtaccatcagatgtagcattacggagtgcccatgcagcttcttttt 55657820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 2 - 137
Target Start/End: Complemental strand, 9891561 - 9891426
Alignment:
Q  2 tgtaaccggggtttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatc 101  Q
    ||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891561 tgtaaccggggtttttccccgcttctccaaccttcagaaaatcctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatc 9891462  T
Q  102 acacagaggcttaatgcaaccctggctcgccaaata 137  Q
    ||||||||||||||||||||||||||||||||||||    
T  9891461 acacagaggcttaatgcaaccctggctcgccaaata 9891426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 9891318 - 9891256
Alignment:
Q  136 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttccttt 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9891318 tactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttccttt 9891256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 14 - 134
Target Start/End: Complemental strand, 13403658 - 13403538
Alignment:
Q  14 ttttctctgcttctccaaccttcagaaaattctcaagacattgtaaacagacagtaacaatttttggatcagagcaaacaagcaaatcacacagaggctt 113  Q
    |||||||||||||||||| |||||||| ||||||||||| || ||||||||| ||||||||| ||||||| | ||||||||| | |||||||||||||||    
T  13403658 ttttctctgcttctccaatcttcagaatattctcaagaccttctaaacagacggtaacaattcttggatcggggcaaacaagaagatcacacagaggctt 13403559  T
Q  114 aatgcaaccctggctcgccaa 134  Q
    |||||||||||||||| ||||    
T  13403558 aatgcaaccctggctcaccaa 13403538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 135 - 199
Target Start/End: Complemental strand, 13403439 - 13403375
Alignment:
Q  135 atactcgatttgctcatgggtactgccagatgtagcattagagagtgcccatgctgcttcctttt 199  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||| ||||    
T  13403439 atacttgatttgctcatgggtaccgccagatgtagcattggagagtgcccatgcagcttcttttt 13403375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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