View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19367_low_3 (Length: 317)
Name: NF19367_low_3
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19367_low_3 |
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| [»] scaffold0252 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 43426502 - 43426222
Alignment:
| Q |
16 |
aaaactttaagggggttattatccaatcgcttcaaaacataaacaacagtttcatgggtcaatgattcacgacattcttcaaactctttctctaactctt |
115 |
Q |
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| T |
43426502 |
aaaactttaagagggttattatccaatcgcttcaaaacataaacaacagtttcatgggtcaatgattcacgacattcttcaaattctttctctaactctt |
43426403 |
T |
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| Q |
116 |
cagaccaatcatttgtgtaaacacgctctaaaattgagttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaaggtaataaattgtgtga |
215 |
Q |
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| T |
43426402 |
cagaccaatcattggtgtaaacacgctctaaaattgagttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaaggtaataaattgtgtga |
43426303 |
T |
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| Q |
216 |
acgattcaacataggaagtgaaaaggaggaagaagaaaaatgagaaacctggtacccagttgcaagaacttgtgtagcgcg |
296 |
Q |
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| T |
43426302 |
acgattcaacataggaagtgaaaaggaggaagaagaaaaatgagaaacctggtacccagttgcaagaacttgtgtagcgcg |
43426222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 15 - 293
Target Start/End: Complemental strand, 43435008 - 43434730
Alignment:
| Q |
15 |
aaaaactttaagggggttattatccaatcgcttcaaaacataaacaacagtttcatgggtcaatgattcacgacattcttcaaactctttctctaactct |
114 |
Q |
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| T |
43435008 |
aaaaactttaattgggtttttatccaatcgcttcaaaacataaacaacagtttcatgagtcaatgattcacgacatgcttccaactctttctctaactct |
43434909 |
T |
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| Q |
115 |
tcagaccaatcatttgtgtaaacacgctctaaaattgagttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaaggtaataaattgtgtg |
214 |
Q |
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| T |
43434908 |
tcagaccaatcattggtaaaaacacgctccaaaatcatgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttgg |
43434809 |
T |
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| Q |
215 |
aacgattcaacataggaagtgaaaaggaggaagaagaaaaatgagaaacctggtacccagttgcaagaacttgtgtagc |
293 |
Q |
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| T |
43434808 |
atcggttcaaaagagggagtgaaaaagaggaagaagaaaagtgagaaacctggttccgagttgcgagaactcgtgtagc |
43434730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 15 - 266
Target Start/End: Complemental strand, 43440875 - 43440624
Alignment:
| Q |
15 |
aaaaactttaagggggttattatccaatcgcttcaaaacataaacaacagtttcatgggtcaatgattcacgacattcttcaaactctttctctaactct |
114 |
Q |
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| T |
43440875 |
aaaaactttaattgggtttttatccaatcgatttaaaacataaacaacagtttcatgggtcaatgattcacgacatgcttccaactctttctctaactct |
43440776 |
T |
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| Q |
115 |
tcagaccaatcatttgtgtaaacacgctctaaaattgagttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaaggtaataaattgtgtg |
214 |
Q |
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| T |
43440775 |
tcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaaaaacagtgtttttgatgattgttgtgaaaacggaatagatcgtgtg |
43440676 |
T |
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| Q |
215 |
aacgattcaacataggaagtgaaaaggaggaagaagaaaaatgagaaacctg |
266 |
Q |
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| T |
43440675 |
aatgattcaaaagagggattgaaaaagtgaaagaagagaagtgagtaacctg |
43440624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0252 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0252
Description:
Target: scaffold0252; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 268
Target Start/End: Complemental strand, 20492 - 20253
Alignment:
| Q |
15 |
aaaaactttaagggggttattatccaatcgcttcaaaacataaacaacagtttcatgggtcaatgattcacgacattcttcaaactctttctctaactct |
114 |
Q |
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|||||||||||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| || || |
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| T |
20492 |
aaaaactttaagtgggtttttatccaatcgcttcaaaacataaacaagagtttcatgggtcaatgattcacgacatgcttccaa--------------ct |
20407 |
T |
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| Q |
115 |
tcagaccaatcatttgtgtaaacacgctctaaaattgagttgggttttgaagaaaaatagtgttttttatgactgttgtgaaaaggtaataaattgtgtg |
214 |
Q |
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| T |
20406 |
tgagaccaatcattggtaaaaacacgctctaaaatcatgttgggttttgaagaaaaatagtgtttttgatgattgttgtgaaaacataacaaatctttgg |
20307 |
T |
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| Q |
215 |
aacgattcaacataggaagtgaaaaggaggaagaagaaaaatgagaaacctggt |
268 |
Q |
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| T |
20306 |
atcgattccaaagagggagtgaaaaagaggaagaagaaaagtgagaaacctggt |
20253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 41930563 - 41930402
Alignment:
| Q |
15 |
aaaaactttaagggggttattatccaatcgcttcaaaacataaacaacagttt--------catgggtcaatgattcacgacattcttcaaactctttct |
106 |
Q |
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||||||||||| |||| |||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |
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| T |
41930563 |
aaaaactttaattaggtttttatccaatcactttaaaacataaacaacagtttgccagtttcatgggtcaatgattcacgacatgcttccaactctttct |
41930464 |
T |
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| Q |
107 |
ctaactcttcagaccaatcatttgtgtaaacacgctctaaaattgagttgggttttgaagaa |
168 |
Q |
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| T |
41930463 |
ctaactcttcagaccaatcgttggtgtaaacacgctctaaaatcatgttgggttttgaagaa |
41930402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 15 - 154
Target Start/End: Original strand, 40186800 - 40186943
Alignment:
| Q |
15 |
aaaaactttaagggggttattatccaatcgcttc-aaaacataaacaacagtttcatgggtcaatgattcacgaca---ttcttcaaactctttctctaa |
110 |
Q |
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|||||||||| | || |||| ||||||||||||| ||||| |||||||||||||||||||| || ||| |||| | || ||| ||||| |||||||| |
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| T |
40186800 |
aaaaactttatgtggtttatgatccaatcgcttcaaaaacgtaaacaacagtttcatgggttaaagatggacgatattgtttttctaactcattctctaa |
40186899 |
T |
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| Q |
111 |
ctcttcagaccaatcatttgtgtaaacacgctctaaaattgagt |
154 |
Q |
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| T |
40186900 |
cttttcagaccattcgtttttataaacaagctgtaaaatagagt |
40186943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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