View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19367_low_4 (Length: 290)

Name: NF19367_low_4
Description: NF19367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19367_low_4
NF19367_low_4
[»] chr3 (3 HSPs)
chr3 (27-276)||(25732809-25733058)
chr3 (81-261)||(30472584-30472764)
chr3 (37-263)||(16939776-16940002)
[»] chr1 (2 HSPs)
chr1 (81-261)||(45278188-45278368)
chr1 (45-258)||(35318350-35318563)
[»] chr5 (2 HSPs)
chr5 (45-258)||(33308868-33309081)
chr5 (81-261)||(9613453-9613633)
[»] chr2 (1 HSPs)
chr2 (81-263)||(12275870-12276052)
[»] chr7 (1 HSPs)
chr7 (81-261)||(3966248-3966428)
[»] chr4 (1 HSPs)
chr4 (137-261)||(2539622-2539746)


Alignment Details
Target: chr3 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 276
Target Start/End: Original strand, 25732809 - 25733058
Alignment:
Q  27 gttggagagactgatgacgttgtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgag 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  25732809 gttggagagactgatgacgttgtaatgaatgaccctgctgcggaagcacctctcaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgag 25732908  T
Q  127 ttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactcttaagtaccttgtctggacatataaaccggaaggaatttttctgtct 226  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25732909 ttttatagcctggaactgtcggggtctaggaagcccgagcatagttccgactcttaagtaccttgtctggacatataaactggaaggaatttttctgtct 25733008  T
Q  227 gaaacaatggcagccttaaataaaattgaagaattaatgcatctcttgtc 276  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25733009 gaaacaatggcagccttaaataaaattgaagaattaatgtatctcttgtc 25733058  T

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Target: chr3; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 81 - 261
Target Start/End: Complemental strand, 30472764 - 30472584
Alignment:
Q  81 aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct 180  Q
    |||||||||||||  ||| | ||||||||||||||||||||||||||||||| |  ||||||||||||||  | || |||||||| | |||| | |||||    
T  30472764 aatgtaatggcggagcctggtcaccaggcccgccaaggaaaatgagttttatcgtatggaactgtcggggcctgggcagcccgagtacagttcccactct 30472665  T
Q  181 taagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatggcagccttaaataaaattgaagaatt 261  Q
    ||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30472664 taagtacctggtccgaacatacaaaccggaaggaatttttctgtctgaaacaatggcagctttaaataaaattgaagaatt 30472584  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 37 - 263
Target Start/End: Complemental strand, 16940002 - 16939776
Alignment:
Q  37 ctgatgacgttgtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcc 136  Q
    |||||||  |||||||||||||  ||||  ||| ||||  ||| |||||||||||||||||| |  ||||||||||||||| ||||||||||| ||        
T  16940002 ctgatgatattgtaatgaatgagtctgcctcggcagcaaatcctaatgtaatggcgggacctggttaccaggcccgccaagaaaaatgagtttcatcagt 16939903  T
Q  137 tggaactgtcggggtttaggaagcccgagcatagttgcgactcttaagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatgg 236  Q
    ||||||||| |||||||||| |||||||| | |||| | | ||| || ||||| ||| |||| |||||||| || | |||||||||||||||||||||||    
T  16939902 tggaactgtaggggtttaggtagcccgagtacagttcctaatctcaaatacctcgtccggacttataaaccagatgcaatttttctgtctgaaacaatgg 16939803  T
Q  237 cagccttaaataaaattgaagaattaa 263  Q
    |||| ||||||||||||||||||||||    
T  16939802 cagctttaaataaaattgaagaattaa 16939776  T

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Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 81 - 261
Target Start/End: Complemental strand, 45278368 - 45278188
Alignment:
Q  81 aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct 180  Q
    |||||||||||||  ||| | ||||||||||||||||||||||||||||||| |  ||||||||||||||  | || |||||||| | |||| | |||||    
T  45278368 aatgtaatggcggagcctggtcaccaggcccgccaaggaaaatgagttttatcgtatggaactgtcggggcctgggcagcccgagtacagttcccactct 45278269  T
Q  181 taagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatggcagccttaaataaaattgaagaatt 261  Q
    ||||||||| ||| | ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45278268 taagtacctggtccgaacatacaaaccggaaggaatttttctgtctgaaacaatggcagctttaaataaaattgaagaatt 45278188  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 45 - 258
Target Start/End: Original strand, 35318350 - 35318563
Alignment:
Q  45 gttgtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactg 144  Q
    ||||||||||||||  ||||| ||| ||||  | | |||||||||||||||||| ||||||||||||||| || | |||||||||  |||  ||||||||    
T  35318350 gttgtaatgaatgagtctgctacggcagcaaatgctaatgtaatggcgggacctggacaccaggcccgcccagaacaatgagtttcttagtgtggaactg 35318449  T
Q  145 tcggggtttaggaagcccgagcatagttgcgactcttaagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatggcagcctta 244  Q
    ||||||| | || |||||||| | |||| | |  || |||||||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||  ||    
T  35318450 tcggggtcttggtagcccgagtacagttcccaacctcaagtaccttgtccggacctacaaaccggaagggatttttctgtctgaaacaatgacagctcta 35318549  T
Q  245 aataaaattgaaga 258  Q
    ||||||||||||||    
T  35318550 aataaaattgaaga 35318563  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 45 - 258
Target Start/End: Complemental strand, 33309081 - 33308868
Alignment:
Q  45 gttgtaatgaatgaccctgctgcggaagcacctcccaatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactg 144  Q
    ||||||||||||||  ||||| ||| ||||  | | |||||||||||||||||| ||||||||||||||| || | |||||||||  |||  ||||||||    
T  33309081 gttgtaatgaatgagtctgctacggcagcaaatgctaatgtaatggcgggacctggacaccaggcccgcccagaacaatgagtttcttagtgtggaactg 33308982  T
Q  145 tcggggtttaggaagcccgagcatagttgcgactcttaagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatggcagcctta 244  Q
    ||||||| | || |||||||| | |||| | |  || |||||||||||| |||| || ||||||||||| ||||||||||||||||||||| ||||  ||    
T  33308981 tcggggtcttggtagcccgagtacagttcccaacctcaagtaccttgtccggacctacaaaccggaagggatttttctgtctgaaacaatgacagctcta 33308882  T
Q  245 aataaaattgaaga 258  Q
    ||||||||| ||||    
T  33308881 aataaaattaaaga 33308868  T

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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 81 - 261
Target Start/End: Complemental strand, 9613633 - 9613453
Alignment:
Q  81 aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct 180  Q
    ||||||||||||||||||  |||||||||||||||||| |||||||| ||||    |||||||||||||||||||| |||||||||| |||| | | | |    
T  9613633 aatgtaatggcgggacctgaacaccaggcccgccaaggcaaatgagtcttatttggtggaactgtcggggtttaggtagcccgagcacagttcctaattt 9613534  T
Q  181 taagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatggcagccttaaataaaattgaagaatt 261  Q
     |||||||| ||| |||| ||||||||||| | |||  | ||||||||||||||| || | |  |||||||||||||||||    
T  9613533 aaagtacctagtccggacctataaaccggatgcaataatcctgtctgaaacaatgacaacatctaataaaattgaagaatt 9613453  T

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Target: chr2 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 81 - 263
Target Start/End: Complemental strand, 12276052 - 12275870
Alignment:
Q  81 aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct 180  Q
    |||||||||||||||  | | |||||||| ||||||||||||||||||||||   |||||||||| ||||| |  | |||| ||||||| || | |||||    
T  12276052 aatgtaatggcgggatatgggcaccaggctcgccaaggaaaatgagttttattagctggaactgttggggtctgagtagcctgagcataattcccactct 12275953  T
Q  181 taagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatggcagccttaaataaaattgaagaattaa 263  Q
    |||| ||||||| || ||||| |||||  ||||||| ||||| |||||||||||| || ||||||||||||||||||||||||    
T  12275952 taagcaccttgtttgaacatacaaaccataaggaatatttctatctgaaacaatgacaaccttaaataaaattgaagaattaa 12275870  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 261
Target Start/End: Complemental strand, 3966428 - 3966248
Alignment:
Q  81 aatgtaatggcgggacctagacaccaggcccgccaaggaaaatgagttttatagcctggaactgtcggggtttaggaagcccgagcatagttgcgactct 180  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||| |||||   |||||||||||||||||||| |||||||||| |||| | | | |    
T  3966428 aatgtaatggcgggacctggacaccatgcccgccaaggtaaatgagtcttatatggtggaactgtcggggtttaggtagcccgagcacagttcctaattt 3966329  T
Q  181 taagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatggcagccttaaataaaattgaagaatt 261  Q
     |||||||| ||| |||| ||||||||||| | |||  |  ||| |||||||||| || | |  |||||||||||||||||    
T  3966328 aaagtacctagtcaggacctataaaccggatgcaataatcatgtatgaaacaatgacaacgtctaataaaattgaagaatt 3966248  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 261
Target Start/End: Original strand, 2539622 - 2539746
Alignment:
Q  137 tggaactgtcggggtttaggaagcccgagcatagttgcgactcttaagtaccttgtctggacatataaaccggaaggaatttttctgtctgaaacaatgg 236  Q
    |||||||||||||||||||| |||||||||| | || | | | | |||||||| ||| |||| |||||| |||| | |||  ||| | ||||||||||      
T  2539622 tggaactgtcggggtttaggtagcccgagcacaatttccaatgtaaagtacctagtccggacctataaatcggatgcaataattccgcctgaaacaataa 2539721  T
Q  237 cagccttaaataaaattgaagaatt 261  Q
    || | |  |||||||||||||||||    
T  2539722 caacgtctaataaaattgaagaatt 2539746  T

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