View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_high_10 (Length: 520)

Name: NF19368_high_10
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_high_10
NF19368_high_10
[»] chr7 (7 HSPs)
chr7 (1-510)||(46643045-46643552)
chr7 (1-441)||(46637324-46637758)
chr7 (1-441)||(46618618-46619052)
chr7 (1-395)||(46629548-46629939)
chr7 (1-141)||(46176421-46176561)
chr7 (285-453)||(46176604-46176772)
chr7 (121-149)||(44170493-44170521)
[»] chr1 (1 HSPs)
chr1 (4-452)||(15769463-15769911)
[»] chr3 (1 HSPs)
chr3 (1-59)||(18376145-18376203)
[»] chr4 (1 HSPs)
chr4 (88-149)||(49584427-49584488)
[»] chr2 (1 HSPs)
chr2 (88-143)||(14467298-14467353)


Alignment Details
Target: chr7 (Bit Score: 460; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 510
Target Start/End: Original strand, 46643045 - 46643552
Alignment:
Q  1 ttcacaagttttctcctcgaaaacttctcaacaccaggaataagaaagaccagataatctttggaggtaacatagccttgatacattggttgctcagagt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643045 ttcacaagttttctcctcgaaaacttatcaacaccaggaataagaaagaccagataatctttggaggtaacatagccttgatacattggttgctcagagt 46643144  T
Q  101 gccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatcgtcacttttggttttgctcagctgaaatcctcctgtcaaggattgaattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643145 gccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatcgtcacttttggttttgctcagctgaaatcctcctgtcaaggattgaattat 46643244  T
Q  201 atcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacgtcaagcctagtaaggtctccc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643245 atcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacgtcaagcctagtaaggtctccc 46643344  T
Q  301 ttctccttaccaatactaactgcttccacaagaacaccaagtccagcagtagacttcaaataagatatgtattcttctagagaagttcttccctcaacat 400  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46643345 ttctccttaccaatactaactgcttccacaagaacgccaagtccagcagtagacttcaaataagatatgtattcttctagagaagttcttccctcaacat 46643444  T
Q  401 atgatttagaaacctgagtataaataaaagcaaagtgaggaatggagcaaatggtgcatggcatgtaatnnnnnnnnnnnggtactggtatggccaaaga 500  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||    
T  46643445 atgatttagaaacctgagtataaatataagcaaagtgaggaatggagcaaatggtgcatggcatgtaat--aaaaaaaaaggtactggtatggccaaaga 46643542  T
Q  501 gcacaggttc 510  Q
    ||||||||||    
T  46643543 gcacaggttc 46643552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 46637758 - 46637324
Alignment:
Q  1 ttcacaagttttctcctcgaaaacttctcaacaccaggaataagaaagaccagataatctttggaggtaacatagccttgatacattggttgctcagagt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| ||||| |||||||||||||||    
T  46637758 ttcacaagttttctccttgaaaacttctcaacaccaggaataagaaaaaccagattatcattggaggtaacatagcctcgatactttggttgctcagagt 46637659  T
Q  101 gccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatcgtcacttttggttttgctcagctgaaatcctcctgtcaaggattgaattat 200  Q
    ||||||||||| |||| || || |||||||||||||||||||||||||| | ||||||||||||||||||| ||||   |||||||||  ||||||||||    
T  46637658 gccaacctcttcccagcaagcggggccaaacagcttcccagaagagatcattacttttggttttgctcagccgaaa---tcctgtcaaatattgaattat 46637562  T
Q  201 atcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacgtcaagcctagtaaggtctccc 300  Q
     |||||| |||||| |||||||| || |||||||| | |||||| ||| ||  ||  || || ||||| |||||||| | |||||||||| |||||||||    
T  46637561 ctcactaagtccaagagaagacaaagatttgcaagctggtgctggaaacgcttca--ac-gtccttcccaggttccatgccaagcctagtgaggtctccc 46637465  T
Q  301 ttctccttaccaatactaactgcttccacaagaacaccaagtccagcagtagacttcaaataagatatgtattcttctagagaagttcttccctcaacat 400  Q
    ||||||||||||||||  || ||||||||||| || ||||||||| |||||||||||||| |||||||||| ||||||||||||||||  ||||| | |     
T  46637464 ttctccttaccaatacctacagcttccacaagtacgccaagtccaacagtagacttcaaaaaagatatgtaatcttctagagaagttccgccctccataa 46637365  T
Q  401 atgatttagaaacctgagtataaataaaagcaaagtgagga 441  Q
    | || || |||| ||| ||||||||| ||||||||||||||    
T  46637364 acgactttgaaatctgtgtataaatataagcaaagtgagga 46637324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 46619052 - 46618618
Alignment:
Q  1 ttcacaagttttctcctcgaaaacttctcaacaccaggaataagaaagaccagataatctttggaggtaacatagccttgatacattggttgctcagagt 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||| | ||||| |||||||||||||||    
T  46619052 ttcacaagttttctcctcgaaaacttctcaacaccgggaataagaaaaaccagataatcattggaagtaacatagcatcgatactttggttgctcagagt 46618953  T
Q  101 gccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatcgtcacttttggttttgctcagctgaaatcctcctgtcaaggattgaattat 200  Q
    ||||||||||||||||||| || ||||||||||| |||||||||||||| | ||||||||||||||||||| ||||   |||||||||  ||||||||||    
T  46618952 gccaacctcttgccagtaagcggggccaaacagcctcccagaagagatcattacttttggttttgctcagccgaaa---tcctgtcaaatattgaattat 46618856  T
Q  201 atcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacgtcaagcctagtaaggtctccc 300  Q
     ||||||||||||| |||||||| ||||||||||| | || |||  ||   | |  ||  || ||||| |||||||| | ||| ||||||||||||||||    
T  46618855 ctcactaggtccaagagaagacaaagctttgcaagctggtactggcaa---cgcttgaacgtccttcccaggttccatgccaatcctagtaaggtctccc 46618759  T
Q  301 ttctccttaccaatactaactgcttccacaagaacaccaagtccagcagtagacttcaaataagatatgtattcttctagagaagttcttccctcaacat 400  Q
     |||||||||||||||  || ||||||||||| |||||||||||| |||||||||||||| ||||| |||| ||||||||||||||||||||||| | |     
T  46618758 atctccttaccaatacctacagcttccacaagtacaccaagtccaacagtagacttcaaagaagatgtgtaatcttctagagaagttcttccctccataa 46618659  T
Q  401 atgatttagaaacctgagtataaataaaagcaaagtgagga 441  Q
    | || || |||| ||| ||||||||| ||| ||||||||||    
T  46618658 acgactttgaaatctgtgtataaatataagtaaagtgagga 46618618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 46629939 - 46629548
Alignment:
Q  1 ttcacaagttttctcctcgaaaacttctcaacaccaggaataagaaagaccagataatctttggaggtaacatagccttgatacattggttgctcagagt 100  Q
    ||||| ||||||||||| |||||||||| |||||||||||||||||| ||||||||||| | |||||||||| | ||| ||||| ||| |||||||||||    
T  46629939 ttcactagttttctccttgaaaacttctgaacaccaggaataagaaaaaccagataatcatcggaggtaacacatcctcgatactttgtttgctcagagt 46629840  T
Q  101 gccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatcgtcacttttggttttgctcagctgaaatcctcctgtcaaggattgaattat 200  Q
    |||| |||||||| ||||| || ||||||||||||||||||||||| || | | ||||||||||||||||| |||||||||||||||| ||||| | |||    
T  46629839 gccatcctcttgctagtaagcgcggccaaacagcttcccagaagagttcattatttttggttttgctcagccgaaatcctcctgtcaaagattgtaatat 46629740  T
Q  201 atcactaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacgtcaagcctagtaaggtctccc 300  Q
    |||||| ||||||| |||||||| || |||||||||| |||||||||| | ||   |||||||||||| |||||| ||  ||||||||||||||||||||    
T  46629739 atcactcggtccaagagaagacaaagatttgcaagttggtgctgaaaacgtcc---gactgttcttcccaggttcgacaccaagcctagtaaggtctccc 46629643  T
Q  301 ttctccttaccaatactaactgcttccacaagaacaccaagtccagcagtagacttcaaataagatatgtattcttctagagaagttcttccctc 395  Q
    ||||  |||||||| |  |||||||||||||||||    | |||| |||||||||||||| |||||||||||| |||||||||| |||| |||||    
T  46629642 ttcttgttaccaatccctactgcttccacaagaacgtttattccaacagtagacttcaaagaagatatgtatttttctagagaaattctgccctc 46629548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 46176421 - 46176561
Alignment:
Q  1 ttcacaagttttctcctcgaaaacttctcaacaccaggaataagaaagaccagataatctttggaggtaacatagccttgatacattggttgctcagagt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||| |||||||| ||||||| ||||| |||||||||||||||    
T  46176421 ttcacaagttttctccttgaaaacttctcaacaccaggaatgagaaaaaccaaataatcttgggaggtaagatagcctcgatactttggttgctcagagt 46176520  T
Q  101 gccaacctcttgccagtaatcgaggccaaacagcttcccag 141  Q
    |||||||||||||||  || || ||||||||||||||||||    
T  46176521 gccaacctcttgccaacaagcggggccaaacagcttcccag 46176561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 285 - 453
Target Start/End: Original strand, 46176604 - 46176772
Alignment:
Q  285 cctagtaaggtctcccttctccttaccaatactaactgcttccacaagaacaccaagtccagcagtagacttcaaataagatatgtattcttctagagaa 384  Q
    |||||||||||||  |||||||||||||||||  |||||||||||||| |||||||||||| || ||||||||||| |||||||||||||||| ||||||    
T  46176604 cctagtaaggtctttcttctccttaccaatacctactgcttccacaaggacaccaagtccaacaatagacttcaaagaagatatgtattcttcaagagaa 46176703  T
Q  385 gttcttccctcaacatatgatttagaaacctgagtataaataaaagcaaagtgaggaatggagcaaatg 453  Q
    |||||  |||| ||| |||| ||||| ||||||||||||||| |  ||||||||||| || ||||||||    
T  46176704 gttctgtcctccacaaatgacttagacacctgagtataaatatacacaaagtgaggactgaagcaaatg 46176772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 44170493 - 44170521
Alignment:
Q  121 cgaggccaaacagcttcccagaagagatc 149  Q
    |||||||||||||||||||||||||||||    
T  44170493 cgaggccaaacagcttcccagaagagatc 44170521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 4 - 452
Target Start/End: Original strand, 15769463 - 15769911
Alignment:
Q  4 acaagttttctcctcgaaaacttctcaacaccaggaataagaaagaccagataatctttggaggtaacatagccttgatacattggttgctcagagtgcc 103  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| ||||||| ||| | ||||||||||||||||||    
T  15769463 acaagtttcctcctcgaaaacttctcaacaccaggaataagaaaaaccaaataatctttggaggtaatatagcctcgattctttggttgctcagagtgcc 15769562  T
Q  104 aacctcttgccagtaatcgaggccaaacagcttcccagaagagatcgtcacttttggttttgctcagctgaaatcctcctgtcaaggattgaattatatc 203  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||| |||| ||||| ||||| ||||| ||||||||    
T  15769563 aacctcttgccagtaagcgaggccaaacagcttcccagaagagatcattacatttggttttgctcagccgaaaccctccagtcaaagattgtattatatc 15769662  T
Q  204 actaggtccaaaagaagacagagctttgcaagtttgtgctgaaaatgccccaggactgttcttcctaggttccacgtcaagcctagtaaggtctcccttc 303  Q
    |||| |||||| |||||||| ||||||||||||| ||||| |||| |||  | |||||||||||  ||| || ||  |||||||||||||||||||||||    
T  15769663 actaagtccaagagaagacaaagctttgcaagttggtgctaaaaacgccttacgactgttcttcacaggctcgacaccaagcctagtaaggtctcccttc 15769762  T
Q  304 tccttaccaatactaactgcttccacaagaacaccaagtccagcagtagacttcaaataagatatgtattcttctagagaagttcttccctcaacatatg 403  Q
    |||||||||||||  |||||||||||||||||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  15769763 tccttaccaatacctactgcttccacaagaacaccaactccaacaatagacttcaaagaagatatgtattcttctagagaagttcttccctccacatatg 15769862  T
Q  404 atttagaaacctgagtataaataaaagcaaagtgaggaatggagcaaat 452  Q
    | ||||||||||||||||||||| | |||||||||||| ||||| ||||    
T  15769863 acttagaaacctgagtataaatatatgcaaagtgaggactggagaaaat 15769911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18376145 - 18376203
Alignment:
Q  1 ttcacaagttttctcctcgaaaacttctcaacaccaggaataagaaagaccagataatc 59  Q
    ||||| |||||||| || |||||||||||||| || ||||||||||| |||||||||||    
T  18376145 ttcactagttttcttcttgaaaacttctcaaccccgggaataagaaaaaccagataatc 18376203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 49584488 - 49584427
Alignment:
Q  88 ggttgctcagagtgccaacctcttgccagtaatcgaggccaaacagcttcccagaagagatc 149  Q
    |||| ||| ||||||||||||||||| ||||  ||||||||||| |||||||| ||||||||    
T  49584488 ggttcctccgagtgccaacctcttgcaagtagacgaggccaaacggcttcccaaaagagatc 49584427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 14467298 - 14467353
Alignment:
Q  88 ggttgctcagagtgccaacctcttgccagtaatcgaggccaaacagcttcccagaa 143  Q
    |||||||| || ||||||||| | || |||||||||||||||||||| ||||||||    
T  14467298 ggttgctctgaatgccaacctttcgcaagtaatcgaggccaaacagcctcccagaa 14467353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University