View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_high_12 (Length: 507)
Name: NF19368_high_12
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 12 - 490
Target Start/End: Complemental strand, 45462075 - 45461576
Alignment:
| Q |
12 |
gaagaagaagaaaatcagagtagcggcactggcctggtcaaagagagtagtgttgccacataggcaagggcatggaaagaacaagaaaaggaagaagaag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45462075 |
gaagaagaagaaaatcagagtagcggcactggcctggtcaaagagaatagtgttgccacataggcaagggcatggaaagaacaagaaaaggaagaagaag |
45461976 |
T |
|
| Q |
112 |
acagtagtactatgtgaaggagttgttaaagacaagaacaaaatcatgcatatttggcaaactatgattttccctgtcaggcgtctatgtcttgctctct |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45461975 |
acagtagtactatgtgaaggagttgttaaagacaagaacaaaatcatgcatatttggcaaactatgattttccctgtcaggcgtctatgtcttgctctct |
45461876 |
T |
|
| Q |
212 |
ctacccgtatcaaccacagcaaaaacggtactcatttcattttcatcttgcttcccct----------ctctttaatttgtacgacttttgcttcttaat |
301 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45461875 |
ctacccgtatcaaccaccgcaaaaacggtactcatttcattttcatcttgcttcccctcaatttcatgctctttaatttgtacgacttttgcttcttaat |
45461776 |
T |
|
| Q |
302 |
taattttattatttttggatggatggttattatagataattaacaacagataacaaccaaccaac-------------tatgatgatcagtgtcaatatt |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
45461775 |
taattttattatttttggatggatggttattatagataattaacaacaaataacaaccaaccaaccatgttttattatgatgatgatcagtgtcaatatt |
45461676 |
T |
|
| Q |
389 |
tgctttcggttaattaatatattacatgacaaattgtttatacctttcggaaatttaattaacaacatattttcagccagcagcatatacggccacctaa |
488 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
45461675 |
tgctttcggttaatta--atattacatgacaaattgtttatacctttcggaaatttaattaacaacctattttcagccagcagcatatacggccacctaa |
45461578 |
T |
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