View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_high_2 (Length: 799)
Name: NF19368_high_2
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 20 - 439
Target Start/End: Complemental strand, 3482447 - 3482036
Alignment:
| Q |
20 |
acaaaggcactcatttacccacgtgaattataaactataaatatcgtagcacacgtctaggcaagttcttgtaaaatatgaatcgattccttaccaatta |
119 |
Q |
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| T |
3482447 |
acaaaggcactcatttacccacatgaattataaactataaatattgtagcacac--------aagttcttgtaaaatatgagtcgattccttatcaatta |
3482356 |
T |
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| Q |
120 |
gatcaaactacacaggctacattttatttttggttaaatgatacttatttcatttcattaataataattattttgttgacaaagatttcaatccttgacg |
219 |
Q |
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| T |
3482355 |
gatcaaactacaccggctacattttatttttggttaaatgatacttatttcatttcattaataataattattttgttgacaaagatttcaatccttgacg |
3482256 |
T |
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| Q |
220 |
agaatacagcagaatttagcatttggtggcagctgaagaaggtactatgttatatagtttcaatttctttgtatgttcactttggttggtatgcaatttc |
319 |
Q |
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| T |
3482255 |
agaatacagcagaatttagcatttggtggcagctgaagaaggtactatgttatatagtttcaatttctttgtatgttcactttggttggtatgcaattcc |
3482156 |
T |
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| Q |
320 |
tgctaccataaatagcttcaaaagtggagtttccattaataaacaactagtatacatataataatcttaatgcacatgcttgcttacatttttgtcatat |
419 |
Q |
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| T |
3482155 |
tgctaccataaatagcttcaaaagtggagtttccattaataaacaactagtatacatataataatcttaatgcacatgcttgcttacatttttgtcatat |
3482056 |
T |
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| Q |
420 |
ttgacctcttaatgcacatg |
439 |
Q |
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| T |
3482055 |
ttgacctcttaatgcacatg |
3482036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 480 - 791
Target Start/End: Complemental strand, 3481997 - 3481682
Alignment:
| Q |
480 |
atgcatgcatatgctgtcttctctctgtctctct----actgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagttg |
575 |
Q |
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| T |
3481997 |
atgcatgcatatgctgtcttctctctctctctctctctactgtctttctcctttgtagtacttgttttgtttacactgaatgcttttgactcctaagttg |
3481898 |
T |
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| Q |
576 |
aagagattcttcagatctgcatggaaaaacttttggacattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaatt |
675 |
Q |
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| T |
3481897 |
aagagattcttcagatctgcatggaaaaacttttggacattgtcagcatcaactattcagctttttgttgattcctaaatgttgaagcttttcaacaatt |
3481798 |
T |
|
| Q |
676 |
cactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgttttacatttttgga |
775 |
Q |
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| T |
3481797 |
cactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtattcatgttgtaactgtttttgaatatgtgaatgttttacatttatgga |
3481698 |
T |
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| Q |
776 |
cttgtttctgatgatg |
791 |
Q |
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| T |
3481697 |
cttgtttctgatgatg |
3481682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 499 - 634
Target Start/End: Complemental strand, 3457572 - 3457432
Alignment:
| Q |
499 |
tctctctgtctctctactgtctttctcctttgtagtacttgttttgtttaca-ctgaatgcttttgactcctaagttgaagagattcttcagatctgcat |
597 |
Q |
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||||||| |||||||||| ||| |||||| ||||||||||||| || || |||||||||||||||||| ||||||||||||||| | |||||| || |
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| T |
3457572 |
tctctctctctctctactttctctctcctcattagtacttgtttttgtttcagctgaatgcttttgactccaaagttgaagagattccttagatctacaa |
3457473 |
T |
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| Q |
598 |
gg-aaaaacttttggaca---ttgtcagcatcaactattca |
634 |
Q |
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| T |
3457472 |
ggaaaaaacttttgtacattgttgtcatcatcaactattca |
3457432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 664 - 729
Target Start/End: Complemental strand, 3457370 - 3457305
Alignment:
| Q |
664 |
ttttcaacaattcactctcatgatgattcagaataacatgtaagattggtttgcttttaatgtatt |
729 |
Q |
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||||||||||||||||||||| ||| |||| |||||||||||||| |||||| ||||||||||||| |
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| T |
3457370 |
ttttcaacaattcactctcatcatggttcacaataacatgtaagactggttttcttttaatgtatt |
3457305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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