View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_high_28 (Length: 385)
Name: NF19368_high_28
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_28 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 40720194 - 40719826
Alignment:
| Q |
1 |
tttgtctttttgaaagnnnnnnngtggaataacacaatggtaagaggacaaagagtagtggattatttaagtgatttcactagctatatttctagatgga |
100 |
Q |
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| T |
40720194 |
tttgtctttttgaaagaaaaaaagtggaataacacaatggtaagaggacaaagaatagtggattatttaagtgatttcactagctatatttctagatgga |
40720095 |
T |
|
| Q |
101 |
caattgtgaaattgttaaataaaatagcattcgtcaattctcatca--tagaaattaaaacagtaattgttcctaaaacttagtttaactgagaatatta |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
40720094 |
caattgtgaaattgttaaataaaatagcattcgtcaattctcatcatctagaaattaaaacagtaattgttcctaaaacttagtttaaatgataatattg |
40719995 |
T |
|
| Q |
199 |
aaattgctagcttaaacacatttacctaaattcaaacttaaaattttgaagttgtgtgtcagtttcaatcgtgtttatcactttgtttatgaac-aaaaa |
297 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||||||||||||| ||||| |
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| T |
40719994 |
aaattgctagcttaaacacatttatctaaattcaaacttaaaattttggagttgtgtgtcagtttcaactgtg-ttatcactttgtttatgaacaaaaaa |
40719896 |
T |
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| Q |
298 |
gaaatgaaaatagtaattaaagactattaacaaaatggtcgttgcttttagcattatttaacaacagtcc |
367 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40719895 |
gaaaacaaaatagtaattaaagactattaacaaaatggtcgttgcttttagcattatttaacaacagtcc |
40719826 |
T |
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