View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_high_29 (Length: 383)

Name: NF19368_high_29
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_high_29
NF19368_high_29
[»] chr5 (4 HSPs)
chr5 (19-369)||(2428512-2428864)
chr5 (46-130)||(6849697-6849781)
chr5 (191-276)||(2428844-2428933)
chr5 (263-306)||(2428445-2428488)
[»] chr3 (2 HSPs)
chr3 (19-148)||(46863489-46863618)
chr3 (28-85)||(54592796-54592853)
[»] chr1 (1 HSPs)
chr1 (19-148)||(40821924-40822052)
[»] chr2 (3 HSPs)
chr2 (30-131)||(40049544-40049645)
chr2 (19-84)||(38550909-38550974)
chr2 (19-107)||(5545439-5545527)
[»] chr6 (1 HSPs)
chr6 (39-99)||(29419977-29420037)
[»] chr4 (1 HSPs)
chr4 (50-107)||(17290974-17291031)


Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 19 - 369
Target Start/End: Original strand, 2428512 - 2428864
Alignment:
Q  19 gttggaacttgtaaaagcacggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattgtaaattggttt 118  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2428512 gttggaacttgtaaaagcacaatggaaaatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattgtaaattggttt 2428611  T
Q  119 tggacttccaaacttgtttccgaacacacatttacttttcttttcatgtaagaaataaagc--nnnnnnnnnncttcaagaaactcttcttccatttagt 216  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||    
T  2428612 tggacttccaaacttgtttccaaacacacatttacttttcttttcatgtaagaaataaagctattttttttttcttcaagaaactcttcttccatttagt 2428711  T
Q  217 ttgagtttttgaataaatttcattttaaacaagactcactatatacacttcaatgtcaaattcacctataattgatgttgtaccaaatagccttactcnn 316  Q
    ||||||||||||||||   |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||      
T  2428712 ttgagtttttgaataatactcattttacacaagactcactatatacacttcaatgtcaaattcgcctataattgatgttgtaccaaatagccttactctt 2428811  T
Q  317 nnnnnnngtcatgcaagaaataaaactattttttcaagaaactcttcttccat 369  Q
            |||||||||||||||||||||||||||||||||||||||||||||    
T  2428812 tttttttttcatgcaagaaataaaactattttttcaagaaactcttcttccat 2428864  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 6849697 - 6849781
Alignment:
Q  46 aatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattgtaaattggttttggacttccaaa 130  Q
    |||||||| | ||||||| | ||||||||||||||| |||| |||||||| |||||||| || ||||||||||||| ||||||||    
T  6849697 aatcacgtctgggtagaagcaatgttttccagcttcagccaaatcacggtcaaagtgcaatggaaattggttttgggcttccaaa 6849781  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 191 - 276
Target Start/End: Original strand, 2428844 - 2428933
Alignment:
Q  191 ttcaagaaactcttcttccatttagtttgagt----ttttgaataaatttcattttaaacaagactcactatatacacttcaatgtcaaa 276  Q
    ||||||||||||||||||||||| ||||||||    ||||||| ||||||||||||| ||||||||| |||||   |||| |||||||||    
T  2428844 ttcaagaaactcttcttccattttgtttgagttttgttttgaagaaatttcattttacacaagactctctataactactttaatgtcaaa 2428933  T

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Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 306
Target Start/End: Original strand, 2428445 - 2428488
Alignment:
Q  263 acttcaatgtcaaattcacctataattgatgttgtaccaaatag 306  Q
    |||||||| |||||||| ||||||||||||||||||||||||||    
T  2428445 acttcaatatcaaattctcctataattgatgttgtaccaaatag 2428488  T

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Target: chr3 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 46863489 - 46863618
Alignment:
Q  19 gttggaacttgtaaaagcacggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattgtaaattggttt 118  Q
    |||||||| |||||||| ||||||||||||||||||| |||||||   ||| ||| |||||||||||   ||||||||||||||||||| ||| |||| |    
T  46863489 gttggaacatgtaaaagtacggtggaaaatcacgtttgggtagaagatatgattttcagcttctgccttttcacggtgaaagtgcattggaaagtggtat 46863588  T
Q  119 tggacttccaaacttgtttccgaacacaca 148  Q
    ||||||||||||||||||||| || |||||    
T  46863589 tggacttccaaacttgtttccaaatacaca 46863618  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 85
Target Start/End: Complemental strand, 54592853 - 54592796
Alignment:
Q  28 tgtaaaagcacggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgcc 85  Q
    ||||||||||||||  |||||||||||   |||||| | |||||||||||||||||||    
T  54592853 tgtaaaagcacggtaaaaaatcacgttatcgtagaagctatgttttccagcttctgcc 54592796  T

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Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 148
Target Start/End: Complemental strand, 40822052 - 40821924
Alignment:
Q  19 gttggaacttgtaaaagcacggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattgtaaattggttt 118  Q
    ||||||||||  ||||  ||||||||||||||| ||| ||||||||||||||||||||||||| |||| |||||||||||| |||| ||  |||||||||    
T  40822052 gttggaacttacaaaattacggtggaaaatcacatttgggtagaaaccatgttttccagcttcagccaaatcacggtgaaattgca-tgagaattggttt 40821954  T
Q  119 tggacttccaaacttgtttccgaacacaca 148  Q
    ||| ||||||||||||||| | ||||||||    
T  40821953 tgggcttccaaacttgttttcaaacacaca 40821924  T

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Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 40049544 - 40049645
Alignment:
Q  30 taaaagcacggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattgtaaattggttttggacttccaa 129  Q
    ||||| |||||||||||||||||||| | ||||| | ||||||||||||||| |||| ||||||||||||||||||||  |||||||||||| |||||||    
T  40049544 taaaatcacggtggaaaatcacgtttggatagaagctatgttttccagcttcagccaaatcacggtgaaagtgcattgggaattggttttgggcttccaa 40049643  T
Q  130 ac 131  Q
    ||    
T  40049644 ac 40049645  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 84
Target Start/End: Complemental strand, 38550974 - 38550909
Alignment:
Q  19 gttggaacttgtaaaagcacggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgc 84  Q
    |||||||  ||||||||||||||| |||||||| ||||| || || | |||||||| |||||||||    
T  38550974 gttggaatatgtaaaagcacggtgaaaaatcacttttagataaaagctatgttttctagcttctgc 38550909  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 5545527 - 5545439
Alignment:
Q  19 gttggaacttgtaaaagcacggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattg 107  Q
    |||||||| ||||||| |||||| |||||||| |||   |||||| ||||||||| |||||| ||||   | ||||| |||||||||||    
T  5545527 gttggaacatgtaaaaacacggtagaaaatcatgttatcgtagaagccatgtttttcagcttgtgcctttttacggtaaaagtgcattg 5545439  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 29419977 - 29420037
Alignment:
Q  39 ggtggaaaatcacgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaa 99  Q
    |||||||||||||||||  |||||| | ||||||||||||||| | || ||||||||||||    
T  29419977 ggtggaaaatcacgtttgagtagaagctatgttttccagcttcagtcaaatcacggtgaaa 29420037  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 17290974 - 17291031
Alignment:
Q  50 acgtttaggtagaaaccatgttttccagcttctgccacatcacggtgaaagtgcattg 107  Q
    |||||| |||| || |||||||||| |||||  |||| ||||||||||||||||||||    
T  17290974 acgtttcggtaaaagccatgttttctagctttagccaaatcacggtgaaagtgcattg 17291031  T

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