View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_high_3 (Length: 696)
Name: NF19368_high_3
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 256 - 682
Target Start/End: Original strand, 42238401 - 42238824
Alignment:
| Q |
256 |
aaatcattttcttcggatgaatgaaagtttatatgagttggacttcaaatactaccaaagacggattttaaagttcatagatagagcgttaatatagtat |
355 |
Q |
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| T |
42238401 |
aaatcattttcttcggatgaatgaaagtttatatgagttgaacttcaaatactatcaaagacggattttaaagctcatagatagagcgttaacatggtat |
42238500 |
T |
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| Q |
356 |
ttaccaattaaccaccaaaaagagaactacgctcaccgcagaaattgaactttcatttgcataggctataagtcaacttcttatcaactggataagacaa |
455 |
Q |
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| T |
42238501 |
ttaccgattaaccaccaaaaagagcactacgctaactgcagaaattgaactttcgcttgcataggctataagtcaacttcttaccaaccgaataagacaa |
42238600 |
T |
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| Q |
456 |
attcgatttctatatgtgagcactcaaacatgtcaaaatgaattatacactactacaatatctgtaaactgcatattgtatctaagtcattatttca-at |
554 |
Q |
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| T |
42238601 |
agtcgatttctatctgtgagcactcaaacatgtcaaaatgaattatacaatactacaatatctgtaaactgcatattgtatctaagtcattatttcatat |
42238700 |
T |
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| Q |
555 |
caggttatatttctgcctttacattaatttctttctttctgtgagtccttaattatataaccgaaaacaaaaccttaaaatctaccacattaagacagga |
654 |
Q |
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| T |
42238701 |
caggttatatttctgcctttacattaatttctttca----gtgagtccttaattatataaccgaaaacaaaaccttaaaatctaccacattaagacagga |
42238796 |
T |
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| Q |
655 |
tgaaagctaggaaaccaaaggttgaaac |
682 |
Q |
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| T |
42238797 |
tgaaagctaggaaaccaaaggttgaaac |
42238824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 11 - 174
Target Start/End: Original strand, 42238179 - 42238342
Alignment:
| Q |
11 |
ataattctatgataacaaatgttgattgattttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacact |
110 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42238179 |
ataattctatgataacaaatgttgattgaatttggattaatcaattattttgaagttgagtacagttaaaagggaagtttatgtacactcatataacact |
42238278 |
T |
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| Q |
111 |
atgttgaacaataaacttaagattaaaaatctacaagattaaaaatcaattgtagacataaaag |
174 |
Q |
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| T |
42238279 |
atgttgaacaataaacttaagattaaaaatctacaagattaaaaatcaattgcagacataaaag |
42238342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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