View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19368_high_38 (Length: 336)
Name: NF19368_high_38
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 38180408 - 38180711
Alignment:
| Q |
23 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180408 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
38180507 |
T |
|
| Q |
123 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
38180508 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgagatggttgatttgttggtaaggcgagtgtgta |
38180607 |
T |
|
| Q |
223 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgat |
322 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180608 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgtttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgat |
38180707 |
T |
|
| Q |
323 |
gatg |
326 |
Q |
| |
|
|||| |
|
|
| T |
38180708 |
gatg |
38180711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 38185077 - 38185380
Alignment:
| Q |
23 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| ||||||||| || ||||| || ||| |
|
|
| T |
38185077 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgttagaaattctgagcagtggcacttaagctcggacctgtaggcgatgaag |
38185176 |
T |
|
| Q |
123 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
222 |
Q |
| |
|
||||||||||||||||| ||| || ||||||| ||| |||||||||||||||||||| ||||| |||||||||| ||||||| |||||| |||||||| |
|
|
| T |
38185177 |
tcttcgttgctttcgaaatttttaccgtcgtcgtagccatcagagaaggtggcgaaggagaggcctgggatggttggtttgttgataaggccagtgtgta |
38185276 |
T |
|
| Q |
223 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgat |
322 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
38185277 |
agtagatagttgtagcaaaagtgacttgtgcgccgaaagaaatgagacgcttggcgaattggagtgcagggtttatgtgaccgtgtagtgggtatgtgat |
38185376 |
T |
|
| Q |
323 |
gatg |
326 |
Q |
| |
|
|||| |
|
|
| T |
38185377 |
gatg |
38185380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 326
Target Start/End: Original strand, 38170594 - 38170897
Alignment:
| Q |
23 |
taagcaagtgaatggacgaccttcctgtttgccggagagtatgatatttgtgagaaattccgagcagcggcgcttaagctcatactcgtaggtgacaaag |
122 |
Q |
| |
|
|||||||||||||||| || ||| |||||| |||||| |||||||||||||||||||| |||| ||| ||| ||| |||| || ||||| ||| | | |
|
|
| T |
38170594 |
taagcaagtgaatggatgattttcttgtttggaggagagaatgatatttgtgagaaattctgagccgcgacgcgtaaactcagacatgtaggagacgatg |
38170693 |
T |
|
| Q |
123 |
tcttcgttgctttcgaattttgggccatcgtcgtggccgtcagagaaggtggcgaaggaaaggcccgggatggttgatttgttggtaaggcgagtgtgta |
222 |
Q |
| |
|
||||||| || | ||||| | || ||||| | |||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| ||| || |
|
|
| T |
38170694 |
tcttcgtcgccaaaggatttttgaccgtcgtcatagccgtcagagaaggtggcgaaggagaggcccgggatggttggtttgttgataaggcgactgtata |
38170793 |
T |
|
| Q |
223 |
agtagatagtggtagcaaaagtgacttgtgcgcccaaagaaatgagacgcttggcgaattggagagcagggtttatgtgaccgtgtagtgggtatgtgat |
322 |
Q |
| |
|
||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||| || |
|
|
| T |
38170794 |
agtggatagtggtagcaaaagtgacttttgcgcccaaagaaatgagacgcttggtgaattggagggcagggtttatgtgaccttgtagtgggtatgttat |
38170893 |
T |
|
| Q |
323 |
gatg |
326 |
Q |
| |
|
|||| |
|
|
| T |
38170894 |
gatg |
38170897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University