View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19368_high_46 (Length: 316)
Name: NF19368_high_46
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_46 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 38180689 - 38180994
Alignment:
| Q |
1 |
cgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38180689 |
cgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcacgaaccagtagagtaaaggaagt |
38180788 |
T |
|
| Q |
101 |
gtgatatgcaacggttatgcatgtatatggatggatagcataagccaagtgtttttatacaagtggtgtccatgctgacgttcgggatgaccaagtactg |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38180789 |
gtgatatgcaacggttatgaatgtatatggatggatagcataagctaagtgtttttatacaagtggtgtccatgctgacgttcgggatgaccaagttctg |
38180888 |
T |
|
| Q |
201 |
tggggtactcatctataagcatgnnnnnnnacaactcatttatctcttgatccttgttaatagtttttcttagaatcttttt-tatccactcctaccgtt |
299 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
38180889 |
tggggtactcatccataagcatgtttttctacaactcatttatctcttgatccttgttaatagtttttcttagaatctttttacatccagtcctaccgtt |
38180988 |
T |
|
| Q |
300 |
gatgat |
305 |
Q |
| |
|
|||||| |
|
|
| T |
38180989 |
gatgat |
38180994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 38185358 - 38185435
Alignment:
| Q |
1 |
cgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaatagcac |
78 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38185358 |
cgtgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtaatggtggcttgtgaaaatgcaatagcac |
38185435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 38170877 - 38170947
Alignment:
| Q |
3 |
tgtagtgggtatgtgatgatgaggaagtggtggttttgcgccatggtagtggtggcttgtgaaaatgcaat |
73 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
38170877 |
tgtagtgggtatgttatgatgaggaagtggtggttttgcgccatggtagtggtggattgtgaaaatgcaat |
38170947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Complemental strand, 17213264 - 17213226
Alignment:
| Q |
233 |
aactcatttatctcttgatccttgttaatagtttttctt |
271 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
17213264 |
aactcattaatctctagatccttgttaatagtttttctt |
17213226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University