View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_high_48 (Length: 312)

Name: NF19368_high_48
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_high_48
NF19368_high_48
[»] chr6 (2 HSPs)
chr6 (185-295)||(25987298-25987408)
chr6 (185-295)||(25987447-25987557)
[»] chr7 (2 HSPs)
chr7 (113-292)||(37790113-37790295)
chr7 (181-221)||(37788714-37788754)
[»] chr3 (2 HSPs)
chr3 (32-100)||(11510382-11510450)
chr3 (32-97)||(11511155-11511220)
[»] chr2 (1 HSPs)
chr2 (37-86)||(13862867-13862916)
[»] chr8 (1 HSPs)
chr8 (68-102)||(43983365-43983399)
[»] chr5 (1 HSPs)
chr5 (32-64)||(18847470-18847502)


Alignment Details
Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 25987298 - 25987408
Alignment:
Q  185 gtgtaattcaccaccacaaacaacttcctaatccaaaccttggtagctcctagtcctaccactaaaaaatgtgactatcttaaaattggcatattcctta 284  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987298 gtgtaattcaccatcacaaacaacttcctaatccaaaccttggtagctcctagtcctaccactaaaaaatgtgactatcttaaaattggcatattcctta 25987397  T
Q  285 ttctccttatt 295  Q
    |||||||||||    
T  25987398 ttctccttatt 25987408  T

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Target: chr6; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 185 - 295
Target Start/End: Original strand, 25987447 - 25987557
Alignment:
Q  185 gtgtaattcaccaccacaaacaacttcctaatccaaaccttggtagctcctagtcctaccactaaaaaatgtgactatcttaaaattggcatattcctta 284  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25987447 gtgtaattcaccatcacaaacaacttcctaatccaaaccttggtagctcctagtcctaccactaaaaaatgtgactatcttaaaattggcatattcctta 25987546  T
Q  285 ttctccttatt 295  Q
    |||||||||||    
T  25987547 ttctccttatt 25987557  T

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Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 113 - 292
Target Start/End: Complemental strand, 37790295 - 37790113
Alignment:
Q  113 acatctctcaatttatttcnnnnnnngaacaaacaacactctcaatttatgaagatt-tgtggtgcaacttgcgtgtaattcaccaccacaaacaacttc 211  Q
    |||||||||||||||||||       || ||||| |||||||||||||||||||||  ||| ||||||||||||||||| |||| |||||||||||||||    
T  37790295 acatctctcaatttatttctttttttgagcaaaccacactctcaatttatgaagataatgtagtgcaacttgcgtgtaactcactaccacaaacaacttc 37790196  T
Q  212 ctaatccaaaccttggtag--ctcctagtcctaccactaaaaaatgtgactatcttaaaattggcatattccttattctcctt 292  Q
    |||||||||||||| | ||  |||||||||| |||||| ||||||||  || || | ||| ||||||||||||||||||||||    
T  37790195 ctaatccaaaccttagcagctctcctagtcccaccactcaaaaatgtagctttcatgaaactggcatattccttattctcctt 37790113  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 221
Target Start/End: Complemental strand, 37788754 - 37788714
Alignment:
Q  181 ttgcgtgtaattcaccaccacaaacaacttcctaatccaaa 221  Q
    |||||||| | ||||||||||||||||||||| ||||||||    
T  37788754 ttgcgtgtgactcaccaccacaaacaacttcccaatccaaa 37788714  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 100
Target Start/End: Original strand, 11510382 - 11510450
Alignment:
Q  32 acttaatatgcatgaagggtggtattatatgaagggtgggaataaactagaggaaagcaagaacaaagt 100  Q
    |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11510382 acttgatatgcattaagggtggtattatatgaagggtgggaataaactagaggaaagcaagaacaaagt 11510450  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 97
Target Start/End: Complemental strand, 11511220 - 11511155
Alignment:
Q  32 acttaatatgcatgaagggtggtattatatgaagggtgggaataaactagaggaaagcaagaacaa 97  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11511220 acttgatatgcatgaagggtggtattatatgaaaggtgggaataaactagaggaaagcaagaacaa 11511155  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 13862916 - 13862867
Alignment:
Q  37 atatgcatgaagggtggtattatatgaagggtgggaataaactagaggaa 86  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13862916 atatgcatgaagggtggtattatataaagggtgggaataaactagaggaa 13862867  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 102
Target Start/End: Complemental strand, 43983399 - 43983365
Alignment:
Q  68 tgggaataaactagaggaaagcaagaacaaagtgc 102  Q
    |||||||||||||||||||||||||||||||||||    
T  43983399 tgggaataaactagaggaaagcaagaacaaagtgc 43983365  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 18847470 - 18847502
Alignment:
Q  32 acttaatatgcatgaagggtggtattatatgaa 64  Q
    |||| ||||||||||||||||||||||||||||    
T  18847470 acttgatatgcatgaagggtggtattatatgaa 18847502  T

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