View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_high_52 (Length: 287)
Name: NF19368_high_52
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_52 |
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Alignment Details
Target: chr5 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 2174550 - 2174679
Alignment:
| Q |
1 |
tttatttctccttttctaataaaataaatcttgctattaaaacactaaagtataggaagtttgagttgaaatgattttgaatcatttgtgacggctatcg |
100 |
Q |
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| T |
2174550 |
tttatttctccttttctaataaaatctatcttgctattaaaacactaaagtataggaagtttgagttgaaaagattttgaatcattggtgaccgctatcg |
2174649 |
T |
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| Q |
101 |
aaaccaaggtgttcctcactcatactggag |
130 |
Q |
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| T |
2174650 |
aaaccaaggtgttcctcactcatactggag |
2174679 |
T |
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Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 269
Target Start/End: Original strand, 2175342 - 2175466
Alignment:
| Q |
126 |
tggagaaacattgatcagcttaaggcagagacaaggtaaggtaaacaaacagcccatttattgcccaggttggctcttacttagtcaaactctacaatta |
225 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| |
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| T |
2175342 |
tggagaaacattgatcagcttaaggcagagacaaggtaaggtaaacaaacagcccattt-----------------gtactgagtcaaactctac--tta |
2175422 |
T |
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| Q |
226 |
aacatgtccttatcttcatttgtactagtactagtacgtataat |
269 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2175423 |
aacatgtccttatcttcatttgtactagtactagtacgtataat |
2175466 |
T |
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