View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_high_56 (Length: 265)

Name: NF19368_high_56
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_high_56
NF19368_high_56
[»] chr7 (5 HSPs)
chr7 (18-249)||(10575401-10575632)
chr7 (118-233)||(354435-354550)
chr7 (74-194)||(39954838-39954958)
chr7 (118-245)||(10580805-10580927)
chr7 (61-101)||(10580932-10580972)
[»] chr8 (1 HSPs)
chr8 (63-248)||(14261014-14261199)
[»] chr3 (7 HSPs)
chr3 (69-248)||(24982061-24982240)
chr3 (72-248)||(24497250-24497426)
chr3 (62-248)||(21584578-21584764)
chr3 (69-248)||(25085053-25085232)
chr3 (69-248)||(24923448-24923627)
chr3 (72-245)||(31825548-31825721)
chr3 (72-248)||(24919877-24920053)
[»] chr4 (3 HSPs)
chr4 (91-245)||(22898571-22898725)
chr4 (91-245)||(22950239-22950393)
chr4 (74-194)||(53328783-53328903)
[»] chr2 (2 HSPs)
chr2 (97-212)||(41027623-41027738)
chr2 (82-179)||(30012097-30012194)
[»] chr5 (1 HSPs)
chr5 (82-179)||(26358549-26358646)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 10575632 - 10575401
Alignment:
Q  18 gttaaaacttacaaagaaaaacccataacaattacacaaaaaacttcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10575632 gttaaaacttacaaagaaaaacccataacaattacacaaaaaacttcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcg 10575533  T
Q  118 taaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctc 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10575532 taaacaacatccatagcagtcacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttataacattctccaagaagatcttcaacacacctc 10575433  T
Q  218 ttgtttcctcatagatcaatccactgattctt 249  Q
    ||||||||||||||||||||||||||||||||    
T  10575432 ttgtttcctcatagatcaatccactgattctt 10575401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 118 - 233
Target Start/End: Complemental strand, 354550 - 354435
Alignment:
Q  118 taaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctc 217  Q
    |||||||||||||||||||| | ||| |||||||| |||||||||||||||||||||||||| |  ||| |||||| |||||| ||||||||||| ||||    
T  354550 taaacaacatccatagcagtcagagtcttcctccttgcatgctcagtgtaagtaacagcatcacaaatctcattctgcaagaaaatcttcaacactcctc 354451  T
Q  218 ttgtttcctcatagat 233  Q
    || |||||||||||||    
T  354450 ttatttcctcatagat 354435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 74 - 194
Target Start/End: Original strand, 39954838 - 39954958
Alignment:
Q  74 aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaac 173  Q
    ||||||||||||| ||||| || ||||| || ||||| || || || ||||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  39954838 aaccaccgaaaccgtagagagtccttccctgcctcttgagagcatacacaacatccatggcggtaacagttttcctcctagcatgctcagtgtaagtaac 39954937  T
Q  174 agcatctcttatcacattctc 194  Q
    |||||| |  |||||||||||    
T  39954938 agcatcacgaatcacattctc 39954958  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 245
Target Start/End: Complemental strand, 10580927 - 10580805
Alignment:
Q  118 taaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctc 217  Q
    |||||||||||||||||||| | ||| ||||||     ||||||||||||||||||||||||    |||  ||||| |||||| ||||||||||  ||||    
T  10580927 taaacaacatccatagcagtcagagtcttcctc-----atgctcagtgtaagtaacagcatcaagaatcttattctgcaagaaaatcttcaacagtcctc 10580833  T
Q  218 ttgtttcctcatagatcaatccactgat 245  Q
    || |||||||||||||||| ||||||||    
T  10580832 ttatttcctcatagatcaaaccactgat 10580805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 101
Target Start/End: Complemental strand, 10580972 - 10580932
Alignment:
Q  61 cttcatcatcttcaaccaccgaaaccatagagggttcttcc 101  Q
    ||||||| |||||| ||||| ||||||||||||||||||||    
T  10580972 cttcatcttcttcatccaccaaaaccatagagggttcttcc 10580932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 63 - 248
Target Start/End: Original strand, 14261014 - 14261199
Alignment:
Q  63 tcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctca 162  Q
    ||||| ||||||||| ||||||||||| |  || |||||||||||||| | ||| ||||||||||||||||||||||| || |||||||||||||| |||    
T  14261014 tcatcttcttcaacctccgaaaccatacaaagtccttccttgtctcttcaacgcataaacaacatccatagcagtaaccgtcttcctcctcgcatgttca 14261113  T
Q  163 gtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 248  Q
    || || |||||||||||||||||||||||||||||||| |||||||||||||| |  ||||| ||||| ||||| || ||||||||    
T  14261114 gtatacgtaacagcatctcttatcacattctccaagaaaatcttcaacacaccgcgagtttcttcataaatcaacccgctgattct 14261199  T

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Target: chr3 (Bit Score: 96; Significance: 4e-47; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 24982240 - 24982061
Alignment:
Q  69 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaa 168  Q
    |||||||||||||||||||||||||||||||||||||||||| |  || || ||||||||||| || |||||||| |||||||| || |||||||||||     
T  24982240 tcttcaaccaccgaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggcggtaacagtcttcctcctagcgtgctcagtgtat 24982141  T
Q  169 gtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 248  Q
    ||||| ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||    
T  24982140 gtaactgcatcacggatgacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattct 24982061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 24497250 - 24497426
Alignment:
Q  72 tcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagta 171  Q
    |||||| || ||||||||||||||||||||||||||||| |  || || ||||||||||| || || ||||| |||||||| || ||||||||||| |||    
T  24497250 tcaacctccaaaaccatagagggttcttccttgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtatgta 24497349  T
Q  172 acagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 248  Q
    || ||||| |  |||||||| ||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||    
T  24497350 actgcatcacggatcacattttccaagaagatcttcaagacacctctggtttcttcatagatcaatccactgattct 24497426  T

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Target: chr3; HSP #3
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 62 - 248
Target Start/End: Original strand, 21584578 - 21584764
Alignment:
Q  62 ttcatcatcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctc 161  Q
    |||||| ||||||||| ||||| ||||| || ||||||||||| ||||| |  || |||||||||||||||||||| ||||| |||||||| ||||||||    
T  21584578 ttcatcttcttcaacctccgaatccataaagcgttcttccttgcctcttcaaagcataaacaacatccatagcagtcacagtcttcctccttgcatgctc 21584677  T
Q  162 agtgtaagtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 248  Q
    |||||| ||||| ||||| |  ||||||||||||||||| ||||| |  || ||||||||||||||||| ||||| |||||||||||    
T  21584678 agtgtacgtaaccgcatcacgaatcacattctccaagaaaatcttaagaactcctcttgtttcctcataaatcaaaccactgattct 21584764  T

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Target: chr3; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 69 - 248
Target Start/End: Complemental strand, 25085232 - 25085053
Alignment:
Q  69 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaa 168  Q
    ||||||||| || |||||||||||||||||||| |||||||| |  || || ||||||||||| || || ||||| |||||||| || |||||||||||     
T  25085232 tcttcaacctccaaaaccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcacagtcttcctccttgcgtgctcagtgtat 25085133  T
Q  169 gtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 248  Q
    ||||| ||||| |  |||||||||||||||||||||||||| |||||||| ||||| ||||| ||||| |||||||||||    
T  25085132 gtaactgcatcacggatcacattctccaagaagatcttcaagacacctctggtttcttcatatatcaaaccactgattct 25085053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 69 - 248
Target Start/End: Original strand, 24923448 - 24923627
Alignment:
Q  69 tcttcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaa 168  Q
    ||||||||| || || ||||||||||||||||| |||||||| |  || || ||||||||||| || || || || |||||||| || |||||||||||     
T  24923448 tcttcaacctccaaatccatagagggttcttccctgtctcttcaaagcatagacaacatccatggctgtcactgtcttcctccttgcgtgctcagtgtat 24923547  T
Q  169 gtaacagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 248  Q
    || |||||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||    
T  24923548 gtcacagcatcacgaatgacattctccaagaagatcttcaagacacctctggtttcttcatagatcaaaccactgattct 24923627  T

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Target: chr3; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 72 - 245
Target Start/End: Original strand, 31825548 - 31825721
Alignment:
Q  72 tcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagta 171  Q
    |||||| ||||| ||||||||||||||||| || ||||| |  || || ||||||||||| || ||||| || |||||||| || ||||||||||| ||     
T  31825548 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacaacatccatcgcggtaactgtcttcctcctagcgtgctcagtgtatgtg 31825647  T
Q  172 acagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgat 245  Q
    || ||||| |  || ||||||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  31825648 accgcatcacggatgacattctccaagaagatcttcaagacacctctagtttcttcatagatcaaaccactgat 31825721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 72 - 248
Target Start/End: Original strand, 24919877 - 24920053
Alignment:
Q  72 tcaaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagta 171  Q
    |||||| ||||| ||||||||||||||||| || ||||| |  || || || |||||||| || || || || |||||||| || ||||||||||| ||     
T  24919877 tcaacctccgaatccatagagggttcttccctgcctcttcaaagcatagacgacatccatggctgtcactgtcttcctcctagcgtgctcagtgtatgtc 24919976  T
Q  172 acagcatctcttatcacattctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgattct 248  Q
    |||||||| |  || |||||||| |||||||||||||| |||||||| ||||| ||||||||||| || ||||||||    
T  24919977 acagcatcacgaatgacattctctaagaagatcttcaagacacctctggtttcttcatagatcaaaccgctgattct 24920053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 22898725 - 22898571
Alignment:
Q  91 agggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacat 190  Q
    ||||||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| || || |||||||||||||| ||||||||||| |||||||    
T  22898725 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22898626  T
Q  191 tctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgat 245  Q
    ||||||| || ||||||||||| || | ||| |||||||| ||||| ||||||||    
T  22898625 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22898571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 91 - 245
Target Start/End: Complemental strand, 22950393 - 22950239
Alignment:
Q  91 agggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacat 190  Q
    ||||||||||| |||||||| || || ||||| ||||||||||||||||| || ||||| || || |||||||||||||| ||||||||||| |||||||    
T  22950393 agggttcttccctgtctcttgagggcataaaccacatccatagcagtaaccgtcttccttctagcgtgctcagtgtaagtcacagcatctctaatcacat 22950294  T
Q  191 tctccaagaagatcttcaacacacctcttgtttcctcatagatcaatccactgat 245  Q
    ||||||| || ||||||||||| || | ||| |||||||| ||||| ||||||||    
T  22950293 tctccaaaaatatcttcaacacgccacgtgtctcctcataaatcaaaccactgat 22950239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 194
Target Start/End: Complemental strand, 53328903 - 53328783
Alignment:
Q  74 aaccaccgaaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaac 173  Q
    |||| |||||||| || || || ||||| || ||||| || ||||||||||||||||| ||||||||||| || |  |  |||||||| ||||| || ||    
T  53328903 aacccccgaaaccgtaaagagtccttccctgcctcttgagagcgtaaacaacatccattgcagtaacagtcttacggcgagcatgctctgtgtatgtgac 53328804  T
Q  174 agcatctcttatcacattctc 194  Q
    |||||| |  |||||||||||    
T  53328803 agcatcacgaatcacattctc 53328783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 212
Target Start/End: Complemental strand, 41027738 - 41027623
Alignment:
Q  97 cttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatctcttatcacattctcca 196  Q
    |||||||||||||| |  || |||||||||||||||||||||||||| || ||||| || ||||| ||||||||||||||||| |  || ||||||||||    
T  41027738 cttccttgtctcttcaatgcataaacaacatccatagcagtaacagtctttctcctagcgtgctctgtgtaagtaacagcatcacgaataacattctcca 41027639  T
Q  197 agaagatcttcaacac 212  Q
    | ||||||||||||||    
T  41027638 aaaagatcttcaacac 41027623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 82 - 179
Target Start/End: Complemental strand, 30012194 - 30012097
Alignment:
Q  82 aaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatc 179  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||| |||||||||||||| || || || |  |  || || ||||||||||||||||||||    
T  30012194 aaaccataaagggtccttccttgcctcttgagcgcataaaccacatccatagcagtcactgtcttgcgacgagcgtgttcagtgtaagtaacagcatc 30012097  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 179
Target Start/End: Original strand, 26358549 - 26358646
Alignment:
Q  82 aaaccatagagggttcttccttgtctcttaagcgcgtaaacaacatccatagcagtaacagttttcctcctcgcatgctcagtgtaagtaacagcatc 179  Q
    |||||||| ||||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| |  |  ||||| ||||||||||| ||||||||    
T  26358549 aaaccataaagggtccttccttgcctcttgagcgcataaacaacatccatagcagtaactgttttgcgacgagcatgttcagtgtaagtgacagcatc 26358646  T

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