View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_high_64 (Length: 237)
Name: NF19368_high_64
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_64 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 41945521 - 41945298
Alignment:
| Q |
1 |
ttttagacctctagtttgtaaaattacgca---ttcagggtgtaattttcttccctctgattttagatggtctattggccccagtatttgtataatttct |
97 |
Q |
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| T |
41945521 |
ttttagacctctagtttgtaaatttacgcaatcttcagggtgtaattttcttccctctaattttagatggtctattggccccagtatttgtataatttct |
41945422 |
T |
|
| Q |
98 |
tagtgttacgggtacataattggctgagctatttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccgaagatgcgacagtg |
197 |
Q |
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| T |
41945421 |
tagtgttatgggcacataattggctgagctatttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccgaagattcgacagtg |
41945322 |
T |
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| Q |
198 |
gtttgaaagatgcatacatagttt |
221 |
Q |
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|||||||||||||||||||||||| |
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| T |
41945321 |
gtttgaaagatgcatacatagttt |
41945298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 41954352 - 41954157
Alignment:
| Q |
31 |
ttcagggtgtaattttcttccctctgattttagatggtctattggccccagtatt---tgtataatttcttagtgttacgggt--acataattggctgag |
125 |
Q |
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| T |
41954352 |
ttcagggtgtaattttcctccctctgattttagatggtctattggccctagtattatctgtataatttcttagttttatgggggcacataattgactggt |
41954253 |
T |
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| Q |
126 |
ctatttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccgaagatgcgacagtggtttgaaagatgcatacatagttt |
221 |
Q |
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| T |
41954252 |
gtatttggttctgtatggtactaaaaccttcagaagtggtccgtatgttcagtgtcggaagatgcgacaatagtttgaaagatgcagacatagttt |
41954157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 92; Significance: 8e-45; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 34 - 221
Target Start/End: Complemental strand, 1214541 - 1214349
Alignment:
| Q |
34 |
agggtgtaattttcttccctctgattttagatggtctattggccccagtatt---tgtataatttcttagtgttacgggt--acataattggctgagcta |
128 |
Q |
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|||||||||||||| |||||||||||||||||||||||||| ||| |||||| |||||||||||||||| ||| ||| ||||| ||| ||| || |
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| T |
1214541 |
agggtgtaattttcctccctctgattttagatggtctattgaccctagtattatctgtataatttcttagttttatgggggcacatacttgactggtgta |
1214442 |
T |
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| Q |
129 |
tttggttctgtatcgtactaaagccttcagaagtggtccgcatgttcagtgtccgaagatgcgacagtggtttgaaagatgcatacatagttt |
221 |
Q |
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| T |
1214441 |
tttggttctgtatggtactaaaaccttcagaagtggtccgtatgttcagtgtcagaagatgcgacgatagtttgaaagatgcagacatagttt |
1214349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 44 - 135
Target Start/End: Complemental strand, 44586335 - 44586244
Alignment:
| Q |
44 |
tttcttccctctgattttagatggtctattggccccagtatttgtataatttcttagtgttacgggtacataattggctgagctatttggtt |
135 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| ||| |||||||||| |||| ||||||||| |
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| T |
44586335 |
tttcttccctctgattttagatggtctattggccctagtatttgtataatttattagtgttatgggcacataattgggtgagttatttggtt |
44586244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 44586238 - 44586194
Alignment:
| Q |
177 |
gtgtccgaagatgcgacagtggtttgaaagatgcatacatagttt |
221 |
Q |
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| T |
44586238 |
gtgtccgaagatgcgatagtagtttgaaagatgcatacatagttt |
44586194 |
T |
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