View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19368_high_68 (Length: 225)
Name: NF19368_high_68
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_high_68 |
 | |
|
| [»] scaffold0312 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 916384 - 916193
Alignment:
| Q |
19 |
tgcatatggataactcagtagatggcacacaacaattttgttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
916384 |
tgcatatggataactcagtagatggcacacaacaattttgttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttg |
916285 |
T |
|
| Q |
119 |
ttcgcttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttc |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
916284 |
ttcgcttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttc |
916193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 924432 - 924244
Alignment:
| Q |
22 |
atatggataactcagtagatggcacacaacaattttgttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttc |
121 |
Q |
| |
|
|||||||||| || | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
924432 |
atatggataatccattggatggcacacaacaattttgttctcacccaacttcttaactccttttgctattatatattgttgtatatcactttctttgttc |
924333 |
T |
|
| Q |
122 |
gcttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaactcttttc |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
924332 |
acttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgactctaatgatgttacacaactcttttc |
924244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 202
Target Start/End: Original strand, 419743 - 419886
Alignment:
| Q |
59 |
ttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagcttcaacattgtttccaagct |
158 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||| ||||||||||| || ||||||||||||| |||||||||||||||| |||||||| || ||||| | |
|
|
| T |
419743 |
ttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtt |
419842 |
T |
|
| Q |
159 |
tagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
419843 |
tagaagtagtgaaatcaaccatagactccaatgatgttacacaa |
419886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 975418 - 975275
Alignment:
| Q |
59 |
ttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagcttcaacattgtttccaagct |
158 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||| ||||||||||| || ||||||||||||| |||||||||||||||| |||||||| || ||||| | |
|
|
| T |
975418 |
ttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtt |
975319 |
T |
|
| Q |
159 |
tagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
||||||| |||||||||||||| || || ||||||||||||||| |
|
|
| T |
975318 |
tagaagtcgtgaaatcaaccatagactccaatgatgttacacaa |
975275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 936561 - 936469
Alignment:
| Q |
110 |
ctttctttgttcgcttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
936561 |
ctttcttttttcacttctgttgaaacagcttcgacattgtttccaagtttcgaagtagtgaaatcaaccatagattccaatgatgttacacaa |
936469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 202
Target Start/End: Complemental strand, 909880 - 909719
Alignment:
| Q |
41 |
tggcacacaacaattttgttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagctt |
140 |
Q |
| |
|
||||||||||| | |||||||| | || ||||| ||||| |||||||||| |||||||||| | |||||||| || ||||||||||||||| | |
|
|
| T |
909880 |
tggcacacaaccaaattgttctctcccattttcttcactccgtttgctattacatattgttgtaaaccactttctccatttacttctgttgaaacagtgt |
909781 |
T |
|
| Q |
141 |
caacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||||| |
|
|
| T |
909780 |
caacattgtttccaagcttcaaagtagtgaaatcaatcatagattccaatgatgtcacacaa |
909719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 960496 - 960350
Alignment:
| Q |
59 |
ttctcactcaacttcttaactccttttgctattatatattgttgtttatca---ctttctttgttcgcttctgttgaaacagcttcaacattgtttccaa |
155 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||| ||||||||| | || || | ||| | | ||||||||||||||||||||||||||||||| | |
|
|
| T |
960496 |
ttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccga |
960397 |
T |
|
| Q |
156 |
gcttagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
| || ||| |||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
960396 |
gtttcgaaatagtgaaatcaaccatagattccaatgaagttacacaa |
960350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 942535 - 942389
Alignment:
| Q |
59 |
ttctcactcaacttcttaactccttttgctattatatattgttgtttatca---ctttctttgttcgcttctgttgaaacagcttcaacattgtttccaa |
155 |
Q |
| |
|
||||||| ||| ||||| |||||||||||||||| ||||||||| | || || | ||| | | ||||||||||||||||||||||||||||||| | |
|
|
| T |
942535 |
ttctcacccaatttcttcactccttttgctattacatattgttgcaaaccattactatttttatccacttctgttgaaacagcttcaacattgtttccga |
942436 |
T |
|
| Q |
156 |
gcttagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
| || ||| | |||||||||||||| ||||| ||||| |||| |||| |
|
|
| T |
942435 |
gtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaa |
942389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 949457 - 949378
Alignment:
| Q |
123 |
cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
||||||| |||| |||||||||||||||||| || || ||| |||||||||||||||| ||||| ||||| ||||||||| |
|
|
| T |
949457 |
cttctgtggaaatagcttcaacattgtttccgagttttgaaatagtgaaatcaaccatagattccaatgaagttacacaa |
949378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 971738 - 971659
Alignment:
| Q |
123 |
cttctgttgaaacagcttcaacattgtttccaagcttagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||| || || ||| | |||||||||||||| ||||| ||||| |||| |||| |
|
|
| T |
971738 |
cttctgttgaaacagcttcaacattgtttccgagtttcgaaatggtgaaatcaaccatagattccaatgaagttatacaa |
971659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0312 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0312
Description:
Target: scaffold0312; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 59 - 202
Target Start/End: Complemental strand, 10828 - 10685
Alignment:
| Q |
59 |
ttctcactcaacttcttaactccttttgctattatatattgttgtttatcactttctttgttcgcttctgttgaaacagcttcaacattgtttccaagct |
158 |
Q |
| |
|
||||||| ||||||||| ||||| ||||||| ||||||||||| || ||||||||||||| |||||||||||||||| |||||||| || ||||| | |
|
|
| T |
10828 |
ttctcacccaacttcttcactccagatgctattgtatattgttgtaaattactttctttgttcacttctgttgaaacagcctcaacatttttaccaagtt |
10729 |
T |
|
| Q |
159 |
tagaagtagtgaaatcaaccattgattctaatgatgttacacaa |
202 |
Q |
| |
|
|||||||||||||||||||||| || || ||||||||||||||| |
|
|
| T |
10728 |
tagaagtagtgaaatcaaccatagactccaatgatgttacacaa |
10685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University