View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19368_low_1 (Length: 817)
Name: NF19368_low_1
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 495 - 816
Target Start/End: Complemental strand, 14259887 - 14259566
Alignment:
| Q |
495 |
tggtgtatgttttgtattgagaagtttgaggaataattcatggtgtattgtagcaactgatacaggttactgattctggtgcttttgtatcaggtttttt |
594 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14259887 |
tggtgtatgttttgtattgagaagtttgaagaataattcatggtgtattgtagtaactgatacaggttactgattctggtgcttttgtatcaggtttttt |
14259788 |
T |
|
| Q |
595 |
cttctagctgggcaagtttgctacaccttgtgttctggttttcttaaccattagtaaagatttacatattcaaaaaataatacttaattgataaaataac |
694 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14259787 |
cttctagctgggcaagtttggtacaccttgtgttctggttttcctaaccattagtaaagatttacatattcaaaaaataatacttaattgataaaataac |
14259688 |
T |
|
| Q |
695 |
ttactactactatcttactacatttctttttccgatgctatttatactagcgttagtgtatgtttgattttgcactgatggattatgtaatttttacgtt |
794 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
14259687 |
ttactactactatcttactacatttctttttccgatgctatttatactagcgttagtgtatgtttgattttgcggtgatggattatgtaatttttacgtt |
14259588 |
T |
|
| Q |
795 |
taaatttattgttcttctcact |
816 |
Q |
| |
|
|||||||||||||| ||||||| |
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|
| T |
14259587 |
taaatttattgttcatctcact |
14259566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 294
Target Start/End: Complemental strand, 14261143 - 14260863
Alignment:
| Q |
1 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14261143 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact |
14261044 |
T |
|
| Q |
101 |
ttgtatggtttcggaggttgaagaagatgatgaagaagttgatttagggttatggttatggttatggttatgaattatgtgtattttgaatgttaggttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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|
| T |
14261043 |
ttgtatggtttcggaggttgaagaagatgatgaagaagttgatttagggttatggt------------tatgaattatgtgtattttgaatgtta-gttt |
14260957 |
T |
|
| Q |
201 |
attttgtaatgtttaagggtgaattagattgatgtatattcagtttttagctgaatttgaaatttgaattcaatgaaagagtaatgtttgggta |
294 |
Q |
| |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14260956 |
atttcgtaatgtttaatggtgaattagattgatgtatattcagtttttagctgaatttgaaatttgaattcaatgaaagagtaatgtttgggta |
14260863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 364 - 436
Target Start/End: Complemental strand, 14260793 - 14260724
Alignment:
| Q |
364 |
aagtatattactagaaagttacagattatcatagttaaataatcagaagagtaaaaagaataggataatggtt |
436 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
14260793 |
aagtatattactagaaagttacagattat---agttaaacaatcagaagagtaaaaagaataggataatggtt |
14260724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 10575458 - 10575587
Alignment:
| Q |
1 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact |
100 |
Q |
| |
|
|||||| ||||||||||||||||| || ||||| |||||||||||||| || || |||||||||||||||||||| ||| | |||||||||||||| || |
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|
| T |
10575458 |
gaatgttataagagatgctgttacttacactgagcatgcgaggaggaaaactgtgactgctatggatgttgtttacgcgcttaagagacaaggaagaacc |
10575557 |
T |
|
| Q |
101 |
ttgtatggtttcggaggttgaagaagatga |
130 |
Q |
| |
|
| ||||||||||| ||||||||| ||||| |
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|
| T |
10575558 |
ctctatggtttcggtggttgaagatgatga |
10575587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Original strand, 354489 - 354551
Alignment:
| Q |
14 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttat |
76 |
Q |
| |
|
||||||||||| || ||||| ||||| ||||||||||| | ||||||||||||||||||||| |
|
|
| T |
354489 |
gatgctgttacttacactgagcatgcaaggaggaagactctgactgctatggatgttgtttat |
354551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 39954956 - 39954838
Alignment:
| Q |
1 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact |
100 |
Q |
| |
|
||||||||| | ||||||||||| || ||||| ||||| |||||||| || ||||| || ||||||||||| ||||| | ||||| || ||||||||| |
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|
| T |
39954956 |
gaatgtgattcgtgatgctgttacttacactgagcatgctaggaggaaaactgttaccgccatggatgttgtgtatgctctcaagaggcagggaaggact |
39954857 |
T |
|
| Q |
101 |
ttgtatggtttcggaggtt |
119 |
Q |
| |
|
| || |||||||| |||| |
|
|
| T |
39954856 |
ctctacggtttcggtggtt |
39954838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 1e-28; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 21584708 - 21584579
Alignment:
| Q |
1 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact |
100 |
Q |
| |
|
||||||||| | ||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||||||||||||||| |||||||| |||||||| || |
|
|
| T |
21584708 |
gaatgtgattcgtgatgcggttacgtacactgagcatgcaaggaggaagactgtgactgctatggatgttgtttatgctttgaagaggcaaggaagaacg |
21584609 |
T |
|
| Q |
101 |
ttgtatggtttcggaggttgaagaagatga |
130 |
Q |
| |
|
| ||||| ||||||||||||||||||||| |
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|
| T |
21584608 |
ctttatggattcggaggttgaagaagatga |
21584579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 14 - 127
Target Start/End: Original strand, 24982130 - 24982243
Alignment:
| Q |
14 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcg |
113 |
Q |
| |
|
||||| ||||| || ||||| || || ||||||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||||||| |
|
|
| T |
24982130 |
gatgcagttacatacactgagcacgctaggaggaagactgttaccgccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggtttcg |
24982229 |
T |
|
| Q |
114 |
gaggttgaagaaga |
127 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
24982230 |
gtggttgaagaaga |
24982243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 25085109 - 25085235
Alignment:
| Q |
1 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact |
100 |
Q |
| |
|
||||||||| | ||||| ||||| || ||||| || || ||||||||||| || || || ||||||||||| ||||| ||||||||||| ||||| || |
|
|
| T |
25085109 |
gaatgtgatccgtgatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacagggaagaacc |
25085208 |
T |
|
| Q |
101 |
ttgtatggtttcggaggttgaagaaga |
127 |
Q |
| |
|
| |||||||| ||||||||||||||| |
|
|
| T |
25085209 |
ctctatggttttggaggttgaagaaga |
25085235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 24497357 - 24497244
Alignment:
| Q |
14 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcg |
113 |
Q |
| |
|
||||| ||||| || ||||| || || ||||||||||| || || || ||||||||||| ||||| ||||||||||||||||| || | |||||||| | |
|
|
| T |
24497357 |
gatgcagttacatacactgagcacgcaaggaggaagactgtgacagccatggatgttgtctatgctttgaagagacaaggaagaaccctctatggttttg |
24497258 |
T |
|
| Q |
114 |
gaggttgaagaaga |
127 |
Q |
| |
|
|||||||| ||||| |
|
|
| T |
24497257 |
gaggttgatgaaga |
24497244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 24923558 - 24923435
Alignment:
| Q |
14 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcg |
113 |
Q |
| |
|
|||||||| || || ||||| || || ||||||||||| || || || ||||||||||| ||||| ||||||||||| ||||| || | ||||| || | |
|
|
| T |
24923558 |
gatgctgtgacatacactgagcacgcaaggaggaagacagtgacagccatggatgttgtctatgctttgaagagacagggaagaaccctctatggatttg |
24923459 |
T |
|
| Q |
114 |
gaggttgaagaagatgatgaagaa |
137 |
Q |
| |
|
|||||||||||| |||| |||||| |
|
|
| T |
24923458 |
gaggttgaagaatatgaagaagaa |
24923435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 136
Target Start/End: Complemental strand, 31825628 - 31825533
Alignment:
| Q |
41 |
aggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggactttgtatggtttcggaggttgaagaagatgatgaaga |
136 |
Q |
| |
|
||||||||||| ||||| || ||||||||||| ||||| |||||||| || ||||| || | ||||| |||||||||||| ||||| || ||||| |
|
|
| T |
31825628 |
aggaggaagacagttaccgcgatggatgttgtctatgctttgaagaggcagggaagaaccctctatggattcggaggttgatgaagaagaagaaga |
31825533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 14 - 100
Target Start/End: Original strand, 41027656 - 41027742
Alignment:
| Q |
14 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggact |
100 |
Q |
| |
|
||||||||||| || || || || || ||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
41027656 |
gatgctgttacttacacagagcacgctaggagaaagactgttactgctatggatgttgtttatgcattgaagagacaaggaaggact |
41027742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 30012097 - 30012182
Alignment:
| Q |
14 |
gatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaaggac |
99 |
Q |
| |
|
||||||||||| || |||||||| || | | ||||| || |||||||||||||| ||||||||| | ||||| ||||||||||| |
|
|
| T |
30012097 |
gatgctgttacttacactgaacacgctcgtcgcaagacagtgactgctatggatgtggtttatgcgctcaagaggcaaggaaggac |
30012182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 22898624 - 22898719
Alignment:
| Q |
1 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag |
96 |
Q |
| |
|
||||||||| ||||||||||| || || ||||| || || || |||||||||||||||||||||||||| |||||||| | |||||||| ||||| |
|
|
| T |
22898624 |
gaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag |
22898719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 22950292 - 22950387
Alignment:
| Q |
1 |
gaatgtgataagagatgctgttacgtatactgaacatgcgaggaggaagacggttactgctatggatgttgtttatgcgttgaagagacaaggaag |
96 |
Q |
| |
|
||||||||| ||||||||||| || || ||||| || || || |||||||||||||||||||||||||| |||||||| | |||||||| ||||| |
|
|
| T |
22950292 |
gaatgtgattagagatgctgtgacttacactgagcacgctagaaggaagacggttactgctatggatgtggtttatgccctcaagagacagggaag |
22950387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 99
Target Start/End: Complemental strand, 26358607 - 26358561
Alignment:
| Q |
53 |
gttactgctatggatgttgtttatgcgttgaagagacaaggaaggac |
99 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| ||||||||||| |
|
|
| T |
26358607 |
gttactgctatggatgttgtttatgcgctcaagaggcaaggaaggac |
26358561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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