View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_11 (Length: 507)
Name: NF19368_low_11
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 487
Target Start/End: Complemental strand, 37303781 - 37303295
Alignment:
| Q |
1 |
gattcgcactatcctctcgttcccatactaatattgaacgatcgcatgcacctgaaaatagcaccgaaccatcgtcgtttagggctaaagcattaaccgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37303781 |
gattcgcactatcctctcgttcccatactaatattgaacgatcgcatgcacctgaaaatagcaccgaaccgtcgtcgtttagggctaaagcattaaccgc |
37303682 |
T |
|
| Q |
101 |
tgatttatgcttctccaaagttgcaactagaacgtgcnnnnnnncaccgacgggtttcgcccaaacgcgtattcgtttatcggatgatcctgtgtacact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37303681 |
tgatttatgcttctccaaagttgcaactagaacgtgctttttttcaccgacgggtttcgcccaaacgcggattcgtttatcggatgatcctgtgtacact |
37303582 |
T |
|
| Q |
201 |
gttccatcgttagaaactacaaccgcgttgaccgcatcttcgtgtgctttgagggattctaagcaacgaagatcagagattctccatattttgagtgttt |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37303581 |
gttccatcgttagaaactgcaaccgcgttgaccgcatcttcgtgtgctttgagggattctaagcaacgaagatcagagattctccatattttgagtgttt |
37303482 |
T |
|
| Q |
301 |
tgtcccatgaaaccgagtagataacgccgttggagactgtgaggtcggtgacagcgtcggcatgttcaatccatagacgttttacgtggcgacggatgtt |
400 |
Q |
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||||||||||||| ||||||||||||||||| || |||| ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
37303481 |
tgtcccatgaaacggagtagataacgccgtttgaaactgcaaggtcggtgacggcgtcggcatgttcaatccagagacgttttacgtggcgacggatgtt |
37303382 |
T |
|
| Q |
401 |
gatgtagttacttgggaggaggaaacggcggagacggtcgttgacagtgggaagagtggttaacttgcggtggttgttgttgttttt |
487 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
37303381 |
gatgtagttacttgggaggaggaaacggcggaaacggtcgttgacagtgggaagagtggttaacttccggtggttgttgttgttttt |
37303295 |
T |
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