View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19368_low_13 (Length: 502)

Name: NF19368_low_13
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19368_low_13
NF19368_low_13
[»] chr4 (18 HSPs)
chr4 (1-328)||(46015666-46015993)
chr4 (169-328)||(46428196-46428355)
chr4 (169-325)||(46027879-46028034)
chr4 (329-384)||(46016023-46016078)
chr4 (333-387)||(46428384-46428438)
chr4 (169-319)||(46303817-46303969)
chr4 (177-319)||(46021197-46021341)
chr4 (14-123)||(46027628-46027737)
chr4 (232-328)||(46015351-46015446)
chr4 (232-328)||(46020583-46020678)
chr4 (229-303)||(46020784-46020861)
chr4 (329-384)||(46020921-46020976)
chr4 (456-495)||(46428507-46428546)
chr4 (232-328)||(46246255-46246350)
chr4 (262-311)||(41074446-41074495)
chr4 (456-489)||(46021029-46021062)
chr4 (331-388)||(46028078-46028135)
chr4 (243-319)||(14320569-14320645)
[»] chr1 (6 HSPs)
chr1 (182-290)||(3804121-3804229)
chr1 (197-314)||(3801740-3801859)
chr1 (212-328)||(3802212-3802327)
chr1 (331-384)||(50668628-50668681)
chr1 (243-306)||(50668040-50668103)
chr1 (208-328)||(3802651-3802767)
[»] chr8 (2 HSPs)
chr8 (251-328)||(4522939-4523015)
chr8 (234-319)||(4525320-4525403)
[»] scaffold0079 (1 HSPs)
scaffold0079 (249-328)||(7948-8026)
[»] scaffold0384 (1 HSPs)
scaffold0384 (251-328)||(5736-5812)
[»] chr3 (1 HSPs)
chr3 (223-325)||(52806365-52806467)


Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-134; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 46015666 - 46015993
Alignment:
Q  1 tgctaagaagccatgtttaaatacaaacaaaaatgaagttgctaagaaacaaagggaaagacgaacaaggagaaattttcgtctggagaatgttcgtaga 100  Q
    ||||||| |||  ||||||||||||||||||||||||||||||||||||||||  | |||||| | | ||||||| ||||||||||||||||||||| |     
T  46015666 tgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaacaaaaagtaagacgcatagggagaaagtttcgtctggagaatgttcgtcgt 46015765  T
Q  101 gcaagaaaaaagaacgaagttgccacagagcgagagaaacagtttattgctaataatnnnnnnngagcaagtaagttttactcaatgctgtaatggtgta 200  Q
    |||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||       ||||||||||||||||||||||||||||||| ||||    
T  46015766 gcaagaaacaagaacgaagttgccgcagagcgagagaaacagtttcttgctaataataaaaaaagagcaagtaagttttactcaatgctgtaatgatgta 46015865  T
Q  201 ttgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaatt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015866 ttgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaatt 46015965  T
Q  301 atttttgctttcctgtttttatgaaaat 328  Q
    ||||||||||||||||||||||||||||    
T  46015966 atttttgctttcctgtttttatgaaaat 46015993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 169 - 328
Target Start/End: Original strand, 46428196 - 46428355
Alignment:
Q  169 aagtaagttttactcaatgctgtaatggtgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttaca 268  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  46428196 aagtaagttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttaca 46428295  T
Q  269 tcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 328  Q
    | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  46428296 ttttgactttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaat 46428355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 169 - 325
Target Start/End: Original strand, 46027879 - 46028034
Alignment:
Q  169 aagtaagttttactcaatgctgtaatggtgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttaca 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |    
T  46027879 aagtaagttttactcaatgctgtaatggtgtattgatatgttctttgcagttaaattaatttaggttaacatgtacttcgtccatctgttatgatttaaa 46027978  T
Q  269 tcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaa 325  Q
    | |||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  46027979 ttttgacttt-aaactatgtgaagatacaattatttttgctttcctgtttttatgaa 46028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 46016023 - 46016078
Alignment:
Q  329 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016023 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 46016078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 333 - 387
Target Start/End: Original strand, 46428384 - 46428438
Alignment:
Q  333 tgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428384 tgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatt 46428438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 169 - 319
Target Start/End: Complemental strand, 46303969 - 46303817
Alignment:
Q  169 aagtaagttttact-caatgctgtaatggtgtattgatatgttctttgcagttatattaatttggg-ttaacatgtacttcgtccatctgttatgattta 266  Q
    |||||||||||||| ||||| ||| |||  ||||| | ||||||||||| || | ||||  ||||| |||||||| | ||| ||||||||||||||||||    
T  46303969 aagtaagttttacttcaatgttgtgatgtcgtattaacatgttctttgctgtgaaattagcttggggttaacatgcatttcatccatctgttatgattta 46303870  T
Q  267 catcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 319  Q
     || ||||||||||||||||||||| | |||||| ||| ||||||||| ||||    
T  46303869 gattttgactttaaaactatgtgaagacacaattctttatgctttcctatttt 46303817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 177 - 319
Target Start/End: Original strand, 46021197 - 46021341
Alignment:
Q  177 tttactcaatgctgtaatggtgtattgat----atgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatctt 272  Q
    ||||||||||||||||||| |||||| ||    || || |||||||||| ||||||||| ||||||||| ||| | |||||||||||||||||| |  ||    
T  46021197 tttactcaatgctgtaatgttgtattaattaatatattatttgcagttaaattaatttgagttaacatgcactccatccatctgttatgatttaga--tt 46021294  T
Q  273 gactttaaaactatgtgaacatacaattatttttgctttcctgtttt 319  Q
    ||||||||||  || |||| | |||||| ||| ||||||||||||||    
T  46021295 gactttaaaatcatttgaagacacaattctttctgctttcctgtttt 46021341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 14 - 123
Target Start/End: Original strand, 46027628 - 46027737
Alignment:
Q  14 tgtttaaatacaaacaaaaatgaagttgctaagaaacaaagggaaagacgaacaaggagaaattttcgtctggagaatgttcgtagagcaagaaaaaaga 113  Q
    ||||||| ||||||||||||||||||||||| ||| ||||  | |||| | |||| |||||| |||||| ||| | |||||||| | |||||||| ||||    
T  46027628 tgtttaattacaaacaaaaatgaagttgctatgaagcaaaaagtaagaagcacaaagagaaagtttcgtgtggtgtatgttcgtcgtgcaagaaacaaga 46027727  T
Q  114 acgaagttgc 123  Q
    ||||||||||    
T  46027728 acgaagttgc 46027737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 46015351 - 46015446
Alignment:
Q  232 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 328  Q
    |||||||||| ||||| ||||||||||||||| ||||| |||| |||||||| ||||||| ||| |||| || ||| ||||||| ||||||||||||    
T  46015351 ggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctg-ttttatgaaaat 46015446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 232 - 328
Target Start/End: Original strand, 46020583 - 46020678
Alignment:
Q  232 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 328  Q
    |||||||||| ||||  ||||||||||||||||||| |  ||| |||||||| ||||||| |||||||| |||||| |||||| |||||||||||||    
T  46020583 ggttaacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttcct-tttttatgaaaat 46020678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 229 - 303
Target Start/End: Original strand, 46020784 - 46020861
Alignment:
Q  229 ttgggttaacatgtacttcgt---ccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatt 303  Q
    ||||||||||||||||| | |   |||||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  46020784 ttgggttaacatgtactacttgatccatctgttatgatttacgttttgactttaaaactatgtgaagatacaattatt 46020861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 329 - 384
Target Start/End: Original strand, 46020921 - 46020976
Alignment:
Q  329 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 384  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  46020921 catatgtctatcttgccgttgttgccagacttgggaaattcagcccatttcattct 46020976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 495
Target Start/End: Original strand, 46428507 - 46428546
Alignment:
Q  456 ttaacagtttcagccatattaaaataacctcacccttcat 495  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46428507 ttaacagtttcagccatattaaaataacctcacccttcat 46428546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 232 - 328
Target Start/End: Complemental strand, 46246350 - 46246255
Alignment:
Q  232 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 328  Q
    |||||||||| ||||  ||||||||||||||||||| |  | | ||||||||  |||||| |||||||| |||||  |||||| |||||||||||||    
T  46246350 ggttaacatgcacttaatccatctgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttcct-tttttatgaaaat 46246255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 311
Target Start/End: Original strand, 41074446 - 41074495
Alignment:
Q  262 atttacatcttgactttaaaactatgtgaacatacaattatttttgcttt 311  Q
    ||||| || ||||||||||||| ||||||| |||||||| ||||||||||    
T  41074446 atttagattttgactttaaaaccatgtgaagatacaattctttttgcttt 41074495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 456 - 489
Target Start/End: Original strand, 46021029 - 46021062
Alignment:
Q  456 ttaacagtttcagccatattaaaataacctcacc 489  Q
    |||||| |||||||||||||||||||||||||||    
T  46021029 ttaacactttcagccatattaaaataacctcacc 46021062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 388
Target Start/End: Original strand, 46028078 - 46028135
Alignment:
Q  331 tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatta 388  Q
    ||||||||| |||| || |||||||  |||| |||||| |||||||||||||||||||    
T  46028078 tatgtttattttgctatggttgccatacttgtgaaatttagcccatttcattctatta 46028135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 14320569 - 14320645
Alignment:
Q  243 acttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 319  Q
    ||||| ||||| ||| |||||||| || || ||| || ||| ||||||| ||||||||  |||||||||||||||||    
T  14320569 acttcatccatttgtcatgatttagatattaactgtagaaccatgtgaagatacaattcattttgctttcctgtttt 14320645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 290
Target Start/End: Complemental strand, 3804229 - 3804121
Alignment:
Q  182 tcaatgctgtaatggtgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaa 281  Q
    |||||| ||| ||| |||||| |||||||||||||  | |  ||| |||||||||||||| ||||| |||||||||||||||||| || |||||||||||    
T  3804229 tcaatgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaa 3804130  T
Q  282 actatgtga 290  Q
    || ||||||    
T  3804129 accatgtga 3804121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 314
Target Start/End: Complemental strand, 3801859 - 3801740
Alignment:
Q  197 tgtattgatatgttctttgcagttatattaatttgggtt--aacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacat 294  Q
    |||||| ||| |||||||||||| | |||| |||||| |  |||||| | ||| |||||||||||||||||| || ||||||||||||| ||||||| |     
T  3801859 tgtattaatacgttctttgcagtgaaattagtttggggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagac 3801760  T
Q  295 acaattatttttgctttcct 314  Q
    |||||| ||| |||||||||    
T  3801759 acaattctttatgctttcct 3801740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 328
Target Start/End: Complemental strand, 3802327 - 3802212
Alignment:
Q  212 tttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgcttt 311  Q
    ||||| |||| ||||||||||  ||| ||| | ||| | ||| |||||||||||| || | ||||||||||| |||||||  |||||||| |||||||||    
T  3802327 tttgcggttaaattaatttggcgtaatatgcatttctttcatatgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgcttt 3802228  T
Q  312 cctgtttttatgaaaat 328  Q
    |||  ||||||||||||    
T  3802227 cct-attttatgaaaat 3802212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 331 - 384
Target Start/End: Original strand, 50668628 - 50668681
Alignment:
Q  331 tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 384  Q
    |||||||||||||| ||||||| ||| ||||| ||||| |||||||||||||||    
T  50668628 tatgtttatcttgctattgttgtcagacttggaaaattgagcccatttcattct 50668681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 50668040 - 50668103
Alignment:
Q  243 acttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattattttt 306  Q
    ||||||||||| ||| |||||||| || ||||||||| ||| ||||||| |||||||| |||||    
T  50668040 acttcgtccatatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttt 50668103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 208 - 328
Target Start/End: Complemental strand, 3802767 - 3802651
Alignment:
Q  208 gttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttg 307  Q
    ||||||||||  | |||||||||||| || |||| ||||| ||||| ||||||   ||| || ||||||||||||  ||||||| ||||||||  |||||    
T  3802767 gttctttgcacatgtattaatttgggctagcatgcacttcttccatttgttat---ttagattttgactttaaaatcatgtgaagatacaattcgttttg 3802671  T
Q  308 ctttcctgtttttatgaaaat 328  Q
     ||||||  ||||||||||||    
T  3802670 ttttcct-attttatgaaaat 3802651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 4523015 - 4522939
Alignment:
Q  251 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 328  Q
    |||||||||||||||| || ||||||||||||| ||||||| | |||||| |||||||||||||| ||||||||||||    
T  4523015 catctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctg-ttttatgaaaat 4522939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 4525403 - 4525320
Alignment:
Q  234 ttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 319  Q
    |||| ||| ||||| ||||||||||||||| ||  | ||||||||||||| ||||||  | |||||| ||||||||||| ||||||    
T  4525403 ttaaaatgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtga--agacaattctttttgctttcttgtttt 4525320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 249 - 328
Target Start/End: Complemental strand, 8026 - 7948
Alignment:
Q  249 tccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 328  Q
    ||||||| ||||||||||||| ||||||||| |||| |||| | |||||||| |||||| |||| || ||||||||||||    
T  8026 tccatctcttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaat 7948  T

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Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 251 - 328
Target Start/End: Complemental strand, 5812 - 5736
Alignment:
Q  251 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 328  Q
    ||||| ||||||||||||| ||||||||| |||| |||| | |||||||| |||||| |||| || ||||||||||||    
T  5812 catctcttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaat 5736  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 223 - 325
Target Start/End: Complemental strand, 52806467 - 52806365
Alignment:
Q  223 attaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttat 322  Q
    ||||| |||||||||| || | | | ||||||| | | |||||| || ||||||||| ||| ||||||| || ||||| ||||| ||||| |||||||||    
T  52806467 attaacttgggttaacttgcattccttccatctttcacgatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttat 52806368  T
Q  323 gaa 325  Q
    |||    
T  52806367 gaa 52806365  T

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