View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_14 (Length: 480)
Name: NF19368_low_14
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 464
Target Start/End: Complemental strand, 56176489 - 56176026
Alignment:
| Q |
1 |
aaagtattcaagatataaatctactaaaagcaatgcaattgtgaattgacaatacggttcttctaacataaaatcaatggatcaaccaaaacgaacacac |
100 |
Q |
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| T |
56176489 |
aaagtattcaagatataaatctactaaaagcaatgcaattgtgaattgacaatacggttcttataacataaaatcaatggatcaaccaaaacgaacacac |
56176390 |
T |
|
| Q |
101 |
aagtattatgaaatacaacggtaaagagaaatagtgaacagagtatgtttttatacaagttgcagtattgaagaaaaatgtatagaagaaagagcgaata |
200 |
Q |
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| T |
56176389 |
aagtattatgaaatacaacggtaaagagaaatagtgaacagagtatgtttttatacaagttgcagtgttgaagaaaaatgtatagaagaaagagcggata |
56176290 |
T |
|
| Q |
201 |
cagaatcataaaaactgagcctacctgtttgcaacattgtaagacacaaaagactgaaaatggaacttgagtcttccctgttcgtcttgcttttttgcac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56176289 |
cagaatcataaaaactgagcctacctgtttgcaacattgtaagacacaaaagactgaaaatggaacttgagtcttccctgttcgtcttgcttttttgcac |
56176190 |
T |
|
| Q |
301 |
catgctttgcatccgtgcctcttccttgacgaagagttatgacaattattggactacccattgatgaaaatgtaggaggaatgacctggatgtcttcaat |
400 |
Q |
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| T |
56176189 |
catgctttgcatccgcgcctcttccttgacgaagagttatgacaattattggactacccattgatgaaaatgtaggaggaatgacctggatgtcttcaat |
56176090 |
T |
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| Q |
401 |
gtcctcccaaagcaaaaagaattttgtcttgtgtccaaacaaatttgcatgaaatccaagtatt |
464 |
Q |
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| T |
56176089 |
gtcctcccaaagcaaaaagaattttgtcttgtgtccaaacaaatttgcatgaaatccaagtatt |
56176026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 221 - 464
Target Start/End: Complemental strand, 9998163 - 9997920
Alignment:
| Q |
221 |
ctacctgtttgcaacattgtaagacacaaaagactgaaaatggaacttgagtcttccctgttcgtcttgcttttttgcaccatgctttgcatccgtgcct |
320 |
Q |
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|||||||| ||| ||| || | || ||||| ||||| ||||||||||| || ||||| || || ||||| |||| ||||||||| |||||||| ||| |
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| T |
9998163 |
ctacctgtgtgcgacactgaacgatacaaaggactggaaatggaactttagccttccttgctcatcttgtgttttcgcaccatgccttgcatccacacct |
9998064 |
T |
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| Q |
321 |
cttccttgacgaagagttatgacaattattggactacccattgatgaaaatgtaggaggaatgacctggatgtcttcaatgtcctcccaaagcaaaaaga |
420 |
Q |
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| T |
9998063 |
ctacccggccgaagagttatgacaactattggactccccattgaagaaaatgtaggaggaacaacctggatttcttcaatatcctcccaaagaaaaaaga |
9997964 |
T |
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| Q |
421 |
attttgtcttgtgtccaaacaaatttgcatgaaatccaagtatt |
464 |
Q |
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| T |
9997963 |
attttgttttctttccaaatagatttgcatgaaatccaattatt |
9997920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 396 - 457
Target Start/End: Original strand, 34570294 - 34570355
Alignment:
| Q |
396 |
tcaatgtcctcccaaagcaaaaagaattttgtcttgtgtccaaacaaatttgcatgaaatcc |
457 |
Q |
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| T |
34570294 |
tcaatatcttcccaaaggaagaaaaattttgttttatgtccaaacaaatttgcataaaatcc |
34570355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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