View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_15 (Length: 468)
Name: NF19368_low_15
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 160 - 466
Target Start/End: Complemental strand, 43054282 - 43053974
Alignment:
| Q |
160 |
tataatggaagaaatgtataatgcatgagattcaggcattgaaaaattcctattgaaaagaaagaacaaaaagcatcataaacacacccttgcttgtcaa |
259 |
Q |
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| T |
43054282 |
tataatggaagaaatgtataatgcatgagattcaggcattgaaaaattcctattgaaaagaaagaacaaaaagtatcataaaaacacccttgcttgtcaa |
43054183 |
T |
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| Q |
260 |
agataaatattcatagaggtctgaaggtgaaatatccacattattgtaccacataaat--taaaacttaagagtcatctaaaaaagaaaccaatgtacaa |
357 |
Q |
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| T |
43054182 |
agataaatattcatagaggtctgaaggtgaaatatccacattattgtaccacataaattataaaacttaagagtcatctaaaaaagaaaccaatgtacaa |
43054083 |
T |
|
| Q |
358 |
caacatcaccggacttcagacgcagaaaggatatgatactgttccaacagaaatgataaactcttcctacagaaagaggagagcaaggggcatgaagtct |
457 |
Q |
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| T |
43054082 |
caacatcaccggacttcagacgcagaaaggatatgatactgttccaacagaaatgataaactcttcctacagaaagaggagagcaaggggcatgaagtct |
43053983 |
T |
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| Q |
458 |
aaaggcaga |
466 |
Q |
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| T |
43053982 |
aaaggcaga |
43053974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 234 - 466
Target Start/End: Complemental strand, 43038077 - 43037847
Alignment:
| Q |
234 |
atcataaacacacccttgcttgtcaaagataaatattcatagaggtctgaaggtgaaatatccacattattgtaccacataaattaaaacttaagagtca |
333 |
Q |
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| T |
43038077 |
atcataaaaacacccttgcttgtcaaagataaatatgcatagaggtctgaaagtgaaatatccacattattgtaccacatagattaaaact--agagtca |
43037980 |
T |
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| Q |
334 |
tctaaaaaagaaaccaatgtacaacaacatcaccggacttcagacgcagaaaggatatgatactgttccaacagaaatgataaactcttcctacagaaag |
433 |
Q |
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| T |
43037979 |
tttaaaaaagaaaccaatgtacaacaacatcaccggactttagaagcagaaaggatatgatactgttccaacagaagtgataaactcttcctacagaaag |
43037880 |
T |
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| Q |
434 |
aggagagcaaggggcatgaagtctaaaggcaga |
466 |
Q |
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| T |
43037879 |
aggagagcaaggggtatggagtctaaaggcaga |
43037847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 43054469 - 43054304
Alignment:
| Q |
1 |
aagagaaattttgttttgaaaagataaatttttagctttcaagataatgaatgaagtaaaaaagttgaagttatgtggcaaaatcatgcatgacaccaac |
100 |
Q |
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| T |
43054469 |
aagagaatttttgttttgaaaagataaatttttagctttcaagataatgaatgaagtaaaaaagttgaagttatgtggcaaaatcatgcatgacaccaac |
43054370 |
T |
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| Q |
101 |
gagctcatgccaaacaaatctactgaaannnnnnnccataaaaaacgttgttgaagaagtataatg |
166 |
Q |
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| T |
43054369 |
gaactcatgccaaacaaatctactgaaatttttttccataaaaaacgttgttgaagaagtataatg |
43054304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 11142389 - 11142346
Alignment:
| Q |
9 |
ttttgttttgaaaagataaatttttagctttcaagataatgaat |
52 |
Q |
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|||||| ||||||||||||||||| ||| ||||||||||||||| |
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| T |
11142389 |
ttttgtattgaaaagataaattttaagcattcaagataatgaat |
11142346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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