View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19368_low_16 (Length: 466)
Name: NF19368_low_16
Description: NF19368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19368_low_16 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 16 - 451
Target Start/End: Original strand, 34701102 - 34701537
Alignment:
| Q |
16 |
atgtgaaacagcaactggatatatacaaaattttgtttgctggctagattgggatgaaatctaagtaaataggacaaatcaggaaagaacccgtgagaat |
115 |
Q |
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| T |
34701102 |
atgtgaaacagcaactggatatatacaaaattttgtttgctggctagattgggatgaaatctaagtaaataggacaaatcaggaaagaacccgtgagaat |
34701201 |
T |
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| Q |
116 |
aattaagctatagtgattgcgatgattacaaatttaaaagttacgaaacacacaaaggttatattaataaaacattgtgtcgacttcaagtaacgtaaat |
215 |
Q |
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| T |
34701202 |
aattaagctatagtgattgcgatgattacaaatttaaaagttacgaaacacacaaaggttatattaataaaacattgtgtcgacttcaagtaacgtaaat |
34701301 |
T |
|
| Q |
216 |
tcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattgggatttgcgagattttagcgtaacgaaccataaatgg |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34701302 |
tcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattgggatttgcgagattttagcgtaacgaaccataaatgg |
34701401 |
T |
|
| Q |
316 |
gattcatgagagggaaccaatgtttgagttatatgatgttgttgcttaaacgcatttaacttctcattttgggtccctttccttcctcgtataccgaaca |
415 |
Q |
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| T |
34701402 |
gattcatgagagggaaccaatgtttgagttatatgatgttgttgcttaaacgcatttaacttctcattttgggtccctttccttcctcgtataccgaaca |
34701501 |
T |
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| Q |
416 |
aatatctcactcacgtgctcgactactggcccatgt |
451 |
Q |
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| T |
34701502 |
aatatctcactcacgtgctcgactactggcccatgt |
34701537 |
T |
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Target: scaffold0005 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 182 - 286
Target Start/End: Complemental strand, 172002 - 171897
Alignment:
| Q |
182 |
ataaaacattgtgtcgacttcaagtaacgtaaa-ttcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattggg |
280 |
Q |
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||||||||| |||| | |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
172002 |
ataaaacatagtgttggcttcaagtaatgtaaaattcatgtcattctcattactgaatatgctctttaaactacagtggtacatatgataattaattggg |
171903 |
T |
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| Q |
281 |
atttgc |
286 |
Q |
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||||| |
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| T |
171902 |
gtttgc |
171897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 182 - 286
Target Start/End: Original strand, 14645289 - 14645394
Alignment:
| Q |
182 |
ataaaacattgtgtcgacttcaagtaacgtaaa-ttcatgtcattctcattcctgaatatgctctttaaactacagtggtacatatgataactaattggg |
280 |
Q |
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||||||||| |||| | |||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
14645289 |
ataaaacatagtgttggcttcaagtaatgtaaaattcatgtcattctcattactgaatatgctctttaaactacagtggtacatatgataattaattggg |
14645388 |
T |
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| Q |
281 |
atttgc |
286 |
Q |
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||||| |
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| T |
14645389 |
gtttgc |
14645394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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